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  5. AGT23431

AGT23431 (N559_1689)


Aliases : N559_1689

Description : glycine betaine/choline ABC transporter membrane protein [Ensembl]. Substrate binding domain of ABC-type glycine betaine transport system, substrate-binding domain [InterProScan].


Gene families : OG_02_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT23431
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AAC75191 yehY, b2130 putative ABC transporter permease [Ensembl].... 0.02 OrthoFinder
AAC75192 osmF, b2131 putative ABC transporter periplasmic binding protein... 0.14 OrthoFinder
AAL20412 STM1493 putative periplasmic component [Ensembl]. Substrate... 0.03 OrthoFinder
AAL20413 STM1494 ABC-type transport system protein [Ensembl].... 0.01 OrthoFinder
AAL21069 STM2165, yehZ putative ABC superfamily transport protein (bind_prot)... 0.14 OrthoFinder
AKI49422 opuCD, L2625_01522 glycine betaine/L-proline ABC transporter, permease... 0.03 OrthoFinder
AKI49423 opuCC, L2625_01523 glycine betaine/L-proline ABC transporter, glycine... 0.02 OrthoFinder
AKI49424 opuCB, L2625_01524 glycine betaine/L-proline ABC transporter, permease... 0.03 OrthoFinder
CCL17066 opuCC, BN171_1180002 ABC-type transport system, glycine... 0.01 OrthoFinder
CPD18769 opuCB, ERS093114_02235 Osmotically activated L-carnitine/choline ABC... 0.01 OrthoFinder
CPD18810 opuCC_2, ERS093114_02236 Osmotically activated L-carnitine/choline ABC... 0.01 OrthoFinder
CRO00991 opuCB_1 Glycine betaine/carnitine/choline transport system... 0.07 OrthoFinder
CRO01020 osmF Putative osmoprotectant uptake system substrate-binding... 0.06 OrthoFinder
CRO01052 opuCB_2 Glycine betaine/carnitine/choline transport system... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0022857 transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004096 catalase activity IEP Enrichment
MF GO:0004357 glutamate-cysteine ligase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0009268 response to pH IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
BP GO:0010447 response to acidic pH IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016805 dipeptidase activity IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071214 cellular response to abiotic stimulus IEP Enrichment
BP GO:0071467 cellular response to pH IEP Enrichment
BP GO:0071468 cellular response to acidic pH IEP Enrichment
BP GO:0104004 cellular response to environmental stimulus IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007210 ABC_Gly_betaine_transp_sub-bd 26 300
No external refs found!