AGT23535 (N559_1799)

Aliases : N559_1799

Description : LysR substrate binding domain protein [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT23535
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
AAC74869	dmlR, b1799	transcriptional activator of dmlA [Ensembl]. LysR...	0.04	OrthoFinder
AAC76096	ttdR, b3060	transcriptional activator of ttdABT [Ensembl]. LysR...	0.02	OrthoFinder
AAC76275	aaeR, b3243	transcriptional regulator for aaeXAB operon [Ensembl]....	0.03	OrthoFinder
AAL20594	STM1677	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AAL22236	STM3367, yhcS	putative LysR family transcriptional regulator...	0.02	OrthoFinder
CRO10861	dmlR_7	D-malate degradation protein R [Ensembl]. LysR substrate...	0.06	OrthoFinder
CRO40258	dmlR_13	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRO61031	dmlR_17	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRP16170	dmlR_23	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRP22590	dmlR_24	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP22917	dmlR_25	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP32263	dmlR_28	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP37683	dmlR_29	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRP68785	dmlR_33	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRP78779	dmlR_35	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
KNA59372	VCV51_031318	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA59855	VCV51_032266	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA59999	VCV51_032411	LysR substrate binding domain-containing protein...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003725	double-stranded RNA binding	IEP	Enrichment
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006749	glutathione metabolic process	IEP	Enrichment
BP	GO:0006751	glutathione catabolic process	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008811	chloramphenicol O-acetyltransferase activity	IEP	Enrichment
MF	GO:0008855	exodeoxyribonuclease VII activity	IEP	Enrichment
MF	GO:0015075	ion transmembrane transporter activity	IEP	Enrichment
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Enrichment
MF	GO:0016842	amidine-lyase activity	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Enrichment
BP	GO:0043171	peptide catabolic process	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
BP	GO:0044273	sulfur compound catabolic process	IEP	Enrichment
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	94	306
IPR000847	Tscrpt_reg_HTH_LysR	13	68

External Links

No external refs found!

AGT23535 (N559_1799)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation