AGT23542 (N559_1808)

Aliases : N559_1808

Description : LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000139 (OrthoFinder) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT23542
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AAC75850	gcvA, b2808	glycine cleavage system transcriptional activator;...	0.04	OrthoFinder
AAL21860	STM2982, gcvA	regulator of gcv operon [Ensembl]. LysR substrate...	0.03	OrthoFinder
AAL22660	STM3800, dsdC	LysR family transcriptional activator [Ensembl]. LysR...	0.01	OrthoFinder
CRO02174	gcvA_2	Gcv operon activator [Ensembl]. LysR substrate binding...	0.03	OrthoFinder
CRO28875	gcvA_3	Gcv operon activator [Ensembl]. LysR substrate binding...	0.02	OrthoFinder
CRP62462	gcvA_8	Gcv operon activator [Ensembl]. LysR substrate binding...	0.03	OrthoFinder
CRP69065	gcvA_9	Gcv operon activator [Ensembl]. LysR substrate binding...	0.04	OrthoFinder
CRP69233	gcvA_10	Gcv operon activator [Ensembl]. LysR substrate binding...	0.03	OrthoFinder
KNA59937	VCV51_032348	LysR substrate binding domain-containing protein...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	Enrichment
MF	GO:0004797	thymidine kinase activity	IEP	Enrichment
MF	GO:0005283	amino acid:sodium symporter activity	IEP	Enrichment
MF	GO:0005343	organic acid:sodium symporter activity	IEP	Enrichment
MF	GO:0005416	amino acid:cation symporter activity	IEP	Enrichment
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Enrichment
BP	GO:0006865	amino acid transport	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
MF	GO:0008897	holo-[acyl-carrier-protein] synthase activity	IEP	Enrichment
MF	GO:0015175	neutral amino acid transmembrane transporter activity	IEP	Enrichment
MF	GO:0015655	alanine:sodium symporter activity	IEP	Enrichment
BP	GO:0015804	neutral amino acid transport	IEP	Enrichment
BP	GO:0015849	organic acid transport	IEP	Enrichment
BP	GO:0015939	pantothenate metabolic process	IEP	Enrichment
BP	GO:0015940	pantothenate biosynthetic process	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Enrichment
MF	GO:0019206	nucleoside kinase activity	IEP	Enrichment
MF	GO:0022858	alanine transmembrane transporter activity	IEP	Enrichment
BP	GO:0032328	alanine transport	IEP	Enrichment
MF	GO:0034618	arginine binding	IEP	Enrichment
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	10	68
IPR005119	LysR_subst-bd	96	292

External Links

No external refs found!