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AGT23558 (N559_1824)


Aliases : N559_1824

Description : hypothetical protein [Ensembl]. L,D-transpeptidase C-terminal domain, L,D-transpeptidase catalytic domain [InterProScan].


Gene families : OG_02_0000888 (OrthoFinder) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT23558
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AAC74748 ldtE, b1678 murein L,D-transpeptidase [Ensembl]. LysM domain [Interproscan]. 0.09 OrthoFinder
AAC75051 ldtA, b1990 L,D-transpeptidase linking Lpp to murein [Ensembl]. L... 0.13 OrthoFinder
AAL20919 STM2015, erfK putative periplasmic protein [Ensembl]. L [Interproscan]. 0.06 OrthoFinder
KNA60726 VCV51_032165 ykud domain-containing protein [Ensembl]. LysM domain... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016740 transferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004357 glutamate-cysteine ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
MF GO:0008851 ethanolamine ammonia-lyase activity IEP Enrichment
MF GO:0016805 dipeptidase activity IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016841 ammonia-lyase activity IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR041597 Ldt_C 223 291
IPR005490 LD_TPept_cat_dom 86 218
No external refs found!