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  5. AGT23927

AGT23927 (N559_2215, CcmF)


Aliases : N559_2215, CcmF

Description : cytochrome C biogenesis protein CcmF [Ensembl].


Gene families : OG_02_0000633 (OrthoFinder) Phylogenetic Tree(s): OG0000633_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT23927
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AAC75256 ccmF, b2196 heme lyase, CcmF subunit [Ensembl]. Cytochrome C... 0.13 OrthoFinder
AAL21151 STM2249, ccmF cytochrome c-type biogenesis protein [Ensembl].... 0.08 OrthoFinder
AAL22673 STM3814, ccmF cytochrome c-type biogenesis protein [Ensembl].... 0.08 OrthoFinder
CRP40889 ccmF Cytochrome c-type biogenesis protein CcmF [Ensembl].... 0.04 OrthoFinder
EDJ91734 CGSHi22421_08263 cytochrome c-type biogenesis protein NrfE [Ensembl].... 0.04 OrthoFinder
EDJ91889 CGSHi22421_09038 cytochrome c-type biogenesis protein CcmF [Ensembl].... 0.06 OrthoFinder
KNA59634 VCV51_031376, CcmF cytochrome c-type biogenesis protein CcmF [Ensembl].... 0.08 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0017004 cytochrome complex assembly IEA Interproscan
MF GO:0020037 heme binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006535 cysteine biosynthetic process from serine IEP Enrichment
BP GO:0006563 L-serine metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006826 iron ion transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0008272 sulfate transport IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
MF GO:0008852 exodeoxyribonuclease I activity IEP Enrichment
MF GO:0009001 serine O-acetyltransferase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009070 serine family amino acid biosynthetic process IEP Enrichment
MF GO:0015116 sulfate transmembrane transporter activity IEP Enrichment
MF GO:0015232 heme transmembrane transporter activity IEP Enrichment
BP GO:0015886 heme transport IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016412 serine O-acyltransferase activity IEP Enrichment
MF GO:0016413 O-acetyltransferase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0017003 protein-heme linkage IEP Enrichment
BP GO:0017006 protein-tetrapyrrole linkage IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
BP GO:0019344 cysteine biosynthetic process IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0072348 sulfur compound transport IEP Enrichment
BP GO:1901678 iron coordination entity transport IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR002541 Cyt_c_assembly 89 296
IPR032523 CcmF_C 316 637
No external refs found!