AGT24168 (N559_2480)

Aliases : N559_2480

Description : putative LysR-family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT24168
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
AAL19287	STM0333	putative LysR family transcriptional regulator...	0.05	OrthoFinder
AGT25823	N559_4198	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
CRO10861	dmlR_7	D-malate degradation protein R [Ensembl]. LysR substrate...	0.06	OrthoFinder
CRO36183	dmlR_11	D-malate degradation protein R [Ensembl]. LysR substrate...	0.06	OrthoFinder
CRP32263	dmlR_28	D-malate degradation protein R [Ensembl]. LysR substrate...	0.07	OrthoFinder
CRP37683	dmlR_29	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004519	endonuclease activity	IEP	Enrichment
MF	GO:0016757	glycosyltransferase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	9	68
IPR005119	LysR_subst-bd	93	301

External Links

No external refs found!