AGT24292 (N559_2616)

Aliases : N559_2616

Description : putative sugar diacid utilization regulator [Ensembl]. GGDEF-like domain, PucR C-terminal helix-turn-helix domain [InterProScan].

Gene families : OG_02_0000759 (OrthoFinder) Phylogenetic Tree(s): OG0000759_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT24292
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AAC73273 cdaR, b0162 carbohydrate diacid regulon transcriptional regulator;... 0.05 OrthoFinder
AAL19174 STM0210, cdaR putative inner membrane protein [Ensembl]. GGDEF-like... 0.04 OrthoFinder
AEA94434 OG1RF_11747 fis family DNA-binding protein [Ensembl]. PucR... 0.03 OrthoFinder
AKI50664 lrp, L2625_02878 Leucine-rich protein [Ensembl]. PucR C-terminal... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004016 adenylate cyclase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005886 plasma membrane IEP Enrichment
BP GO:0006171 cAMP biosynthetic process IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
MF GO:0008887 glycerate kinase activity IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0009975 cyclase activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
BP GO:0031388 organic acid phosphorylation IEP Enrichment
BP GO:0046058 cAMP metabolic process IEP Enrichment
BP GO:0052652 cyclic purine nucleotide metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR041522 CdaR_GGDEF 147 261
IPR025736 PucR_C-HTH_dom 311 367
IPR008599 Diacid_rec 4 135
No external refs found!