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AGT24313 (N559_2637)


Aliases : N559_2637

Description : fimbrial usher protein [Ensembl]. PapC N-terminal domain, PapC C-terminal domain [InterProScan].


Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24313
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AAC77273 fimD, b4317 fimbrial usher outer membrane porin protein; FimCD... 0.02 OrthoFinder
AAL21053 STM2150, stcC putative outer membrane protein [Ensembl]. PapC... 0.03 OrthoFinder
AGT22732 N559_0945, FimD outer membrane usher protein FimD [Ensembl]. PapC... 0.02 OrthoFinder
AGT23011 N559_1247 fimbrial usher protein [Ensembl]. PapC N-terminal... 0.05 OrthoFinder
AGT23014 N559_1250 outer membrane protein; export and assembly of type 1... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0009297 pilus assembly IEA Interproscan
MF GO:0015473 fimbrial usher porin activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP Enrichment
MF GO:0008774 acetaldehyde dehydrogenase (acetylating) activity IEP Enrichment
MF GO:0008855 exodeoxyribonuclease VII activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0015716 organic phosphonate transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR000015 Fimb_usher 191 743
IPR025885 PapC_N 30 175
IPR025949 PapC-like_C 752 813
No external refs found!