AGT24322 (N559_2646, LysR)


Aliases : N559_2646, LysR

Description : transcriptional regulator LysR [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].


Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24322
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AAC75590 hcaR, b2537 hca operon transcriptional regulator [Ensembl]. LysR... 0.05 OrthoFinder
AAL22693 STM3834 putative LysR family transcriptional regulator... 0.03 OrthoFinder
AEA93063 OG1RF_10376 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT24668 N559_3005, CysB transcriptional regulator CysB [Ensembl]. LysR substrate... 0.04 OrthoFinder
AGT26618 N559_5041 putative LysR-family transcriptional regulator... 0.04 OrthoFinder
CPC63513 cidR, ERS093114_00910 LysR family regulatory protein CidR [Ensembl]. LysR... 0.03 OrthoFinder
CRN70888 gltC_1 HTH-type transcriptional regulator GltC [Ensembl]. LysR... 0.03 OrthoFinder
CRN91471 yofA_1 HTH-type transcriptional regulator YofA [Ensembl]. LysR... 0.03 OrthoFinder
CRP00540 cysL_3 CysJI operon transcriptional activator [Ensembl]. LysR... 0.03 OrthoFinder
CRP03013 gltC_5 HTH-type transcriptional regulator GltC [Ensembl]. LysR... 0.05 OrthoFinder
CRP05348 cmpR_4 HTH-type transcriptional activator CmpR [Ensembl]. LysR... 0.03 OrthoFinder
CRP53545 cynR_8 Cyn operon transcriptional activator [Ensembl]. LysR... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
InterPro domains Description Start Stop
IPR005119 LysR_subst-bd 91 294
IPR000847 Tscrpt_reg_HTH_LysR 9 64
No external refs found!