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  5. AGT24348

AGT24348 (N559_2672)


Aliases : N559_2672

Description : putative transport protein [Ensembl]. GGDEF domain [InterProScan].


Gene families : OG_02_0000013 (OrthoFinder) Phylogenetic Tree(s): OG0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24348
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AAC74595 dgcF, b1522 putative membrane-bound diguanylate cyclase [Ensembl].... 0.02 OrthoFinder
CCL17606 BN171_1610002 Putative diguanylate kinase signaling protein [Ensembl].... 0.03 OrthoFinder
CRO93456 ydaM_1 putative diguanylate cyclase YdaM [Ensembl]. PAS fold,... 0.02 OrthoFinder
KNA54690 VCV51_030775 GGDEF domain-containing protein [Ensembl]. Diguanylate... 0.03 OrthoFinder
KNA55694 VCV51_031005 GGDEF domain-containing protein [Ensembl]. Diguanylate... 0.03 OrthoFinder
KNA55698 VCV51_031009 CHASE domain-containing protein [Ensembl]. CHASE domain,... 0.03 OrthoFinder
KNA59940 VCV51_032352 CHASE domain-containing protein [Ensembl]. CHASE domain,... 0.03 OrthoFinder
KNA59943 VCV51_032355 GGDEF domain-containing protein [Ensembl]. Diguanylate... 0.03 OrthoFinder
KNA60713 VCV51_032152 GGDEF domain-containing protein [Ensembl]. Diguanylate... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003714 transcription corepressor activity IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004359 glutaminase activity IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016989 sigma factor antagonist activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000160 GGDEF_dom 305 463
No external refs found!