AGT24425 (N559_2752)

Aliases : N559_2752

Description : LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT24425
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AAC76609 yiaU, b3585 putative DNA-binding transcriptional regulator... 0.03 OrthoFinder
AAL20631 STM1713, cysB transcriptional regulator for cysteine regulon... 0.03 OrthoFinder
AGT23255 N559_1502 putative LysR-family transcriptional regulator... 0.04 OrthoFinder
AGT23273 N559_1520, CynR DNA-binding transcriptional regulator CynR [Ensembl].... 0.05 OrthoFinder
AGT24668 N559_3005, CysB transcriptional regulator CysB [Ensembl]. LysR substrate... 0.03 OrthoFinder
CRN91471 yofA_1 HTH-type transcriptional regulator YofA [Ensembl]. LysR... 0.04 OrthoFinder
CRO72193 hcaR_3 Hca operon transcriptional activator [Ensembl]. LysR... 0.03 OrthoFinder
CRO97148 gltC_4 HTH-type transcriptional regulator GltC [Ensembl]. LysR... 0.04 OrthoFinder
CRP00540 cysL_3 CysJI operon transcriptional activator [Ensembl]. LysR... 0.02 OrthoFinder
CRP45508 benM_8 Ben and cat operon transcriptional regulator [Ensembl].... 0.02 OrthoFinder
CRP53545 cynR_8 Cyn operon transcriptional activator [Ensembl]. LysR... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008855 exodeoxyribonuclease VII activity IEP Enrichment
MF GO:0009881 photoreceptor activity IEP Enrichment
MF GO:0009882 blue light photoreceptor activity IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0038023 signaling receptor activity IEP Enrichment
BP GO:0046688 response to copper ion IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR005119 LysR_subst-bd 89 295
IPR000847 Tscrpt_reg_HTH_LysR 5 64
No external refs found!