AGT24676 (N559_3013)


Aliases : N559_3013

Description : putative LysR family regulatory protein [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].


Gene families : OG_02_0000139 (OrthoFinder) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24676
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
CRO28875 gcvA_3 Gcv operon activator [Ensembl]. LysR substrate binding... 0.02 OrthoFinder
CRO53395 gcvA_6 Gcv operon activator [Ensembl]. LysR substrate binding... 0.04 OrthoFinder
CRP62462 gcvA_8 Gcv operon activator [Ensembl]. LysR substrate binding... 0.02 OrthoFinder
KNA56897 VCV51_030532 LysR substrate binding domain-containing protein... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004357 glutamate-cysteine ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0008851 ethanolamine ammonia-lyase activity IEP Enrichment
MF GO:0009881 photoreceptor activity IEP Enrichment
MF GO:0009882 blue light photoreceptor activity IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016841 ammonia-lyase activity IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0019645 anaerobic electron transport chain IEP Enrichment
MF GO:0038023 signaling receptor activity IEP Enrichment
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 6 65
IPR005119 LysR_subst-bd 93 287
No external refs found!