Aliases : N559_3175
Description : transcription-repair coupling factor [Ensembl]. TRCF domain, UvrB interaction domain, Helicase conserved C-terminal domain, DEAD/DEAH box helicase domain [InterProScan].
Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AGT24835 | |
Cluster | HCCA: Cluster_53 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC74198 | mfd, b1114 | transcription-repair coupling factor [Ensembl].... | 0.04 | OrthoFinder | |
AAL20145 | STM1216, mfd | transcription-repair coupling factor [Ensembl].... | 0.09 | OrthoFinder | |
EDJ91013 | CGSHi22421_02786 | transcription-repair coupling factor [Ensembl].... | 0.04 | OrthoFinder | |
KNA59432 | VCV51_031278 | transcription-repair coupling factor [Ensembl].... | 0.06 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006281 | DNA repair | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004375 | glycine dehydrogenase (decarboxylating) activity | IEP | Enrichment |
BP | GO:0006544 | glycine metabolic process | IEP | Enrichment |
BP | GO:0006546 | glycine catabolic process | IEP | Enrichment |
BP | GO:0006721 | terpenoid metabolic process | IEP | Enrichment |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Enrichment |
MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Enrichment |
BP | GO:0009056 | catabolic process | IEP | Enrichment |
BP | GO:0009063 | cellular amino acid catabolic process | IEP | Enrichment |
BP | GO:0009071 | serine family amino acid catabolic process | IEP | Enrichment |
BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | Enrichment |
BP | GO:0016114 | terpenoid biosynthetic process | IEP | Enrichment |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Enrichment |
MF | GO:0016642 | oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | IEP | Enrichment |
MF | GO:0016744 | transketolase or transaldolase activity | IEP | Enrichment |
MF | GO:0016787 | hydrolase activity | IEP | Enrichment |
BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | Enrichment |
BP | GO:0043647 | inositol phosphate metabolic process | IEP | Enrichment |
BP | GO:0044282 | small molecule catabolic process | IEP | Enrichment |
BP | GO:0046164 | alcohol catabolic process | IEP | Enrichment |
BP | GO:0046174 | polyol catabolic process | IEP | Enrichment |
BP | GO:0046838 | phosphorylated carbohydrate dephosphorylation | IEP | Enrichment |
BP | GO:0046855 | inositol phosphate dephosphorylation | IEP | Enrichment |
BP | GO:0071545 | inositol phosphate catabolic process | IEP | Enrichment |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Enrichment |
BP | GO:1901575 | organic substance catabolic process | IEP | Enrichment |
BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Enrichment |
BP | GO:1901616 | organic hydroxy compound catabolic process | IEP | Enrichment |
No external refs found! |