AGT24894 (N559_3234)

Aliases : N559_3234

Description : LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT24894
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AAL22467	STM3607, yhjC	putative LysR family transcriptional regulator...	0.04	OrthoFinder
AGT23444	N559_1702	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AKP14845	dmlR_2, WX61_00778	HTH-type transcriptional regulator DmlR [Ensembl]. LysR...	0.03	OrthoFinder
CRN86190	dmlR_3	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRO42652	dmlR_14	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRO61031	dmlR_17	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP37683	dmlR_29	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRP53621	dmlR_30	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
KNA55708	VCV51_031016	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA59372	VCV51_031318	LysR substrate binding domain-containing protein...	0.05	OrthoFinder
KNA59855	VCV51_032266	LysR substrate binding domain-containing protein...	0.05	OrthoFinder
KNA59858	VCV51_032269	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA59999	VCV51_032411	LysR substrate binding domain-containing protein...	0.05	OrthoFinder
KNA60706	VCV51_032145	LysR substrate binding domain-containing protein...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	Enrichment
BP	GO:0010035	response to inorganic substance	IEP	Enrichment
BP	GO:0010038	response to metal ion	IEP	Enrichment
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0015675	nickel cation transport	IEP	Enrichment
BP	GO:0035444	nickel cation transmembrane transport	IEP	Enrichment
BP	GO:0046688	response to copper ion	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	88	294
IPR000847	Tscrpt_reg_HTH_LysR	4	63

External Links

No external refs found!