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AGT25473 (N559_3837)


Aliases : N559_3837

Description : sugar ABC transport system permease component [Ensembl].


Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT25473
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AAC74587 lsrC, b1514 autoinducer 2 import system permease protein [Ensembl].... 0.2 OrthoFinder
AAC74588 lsrD, b1515 autoinducer 2 import system permease protein [Ensembl].... 0.18 OrthoFinder
AAC76773 rbsC, b3750 D-ribose ABC transporter permease [Ensembl].... 0.08 OrthoFinder
AAC77047 alsC, b4086 D-allose ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AAC77187 ytfT, b4230 putative sugar ABC transporter permease [Ensembl].... 0.06 OrthoFinder
AAC77188 yjfF, b4231 putative sugar ABC transporter permease [Ensembl].... 0.05 OrthoFinder
AAL22741 STM3883, rbsC D-ribose high-affinity transport protein (1st module,... 0.03 OrthoFinder
AAL22915 STM4075, ydeY putative sugar transport protein [Ensembl].... 0.11 OrthoFinder
AAL22916 STM4076, ydeZ putative sugar transport protein [Ensembl].... 0.11 OrthoFinder
AGT24251 N559_2570 putative ribose/xylose/arabinose/galactoside ABC-type... 0.04 OrthoFinder
AGT25326 N559_3686 putative ABC-type sugar transport system permease... 0.03 OrthoFinder
AGT25327 N559_3687 putative inner-membrane translocator [Ensembl]. 0.03 OrthoFinder
AGT25343 N559_3703 inner-membrane translocator [Ensembl]. 0.03 OrthoFinder
AGT26396 N559_4806 putative carbohydrate ABC transport system permease [Ensembl]. 0.04 OrthoFinder
AGT26697 N559_5123 ribose ABC transporter permease protein [Ensembl]. 0.05 OrthoFinder
CCL17792 BN171_1800015 ABC-type transport system, sugar-family permease... 0.03 OrthoFinder
CRN86499 rbsC Ribose transport system permease protein RbsC [Ensembl].... 0.05 OrthoFinder
EDJ91405 CGSHi22421_04858 beta-methylgalactoside transporter inner membrane... 0.03 OrthoFinder
KNA60662 VCV51_032101 branched-chain amino acid transport system/permease... 0.05 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP Enrichment
MF GO:0008184 glycogen phosphorylase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0050498 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 59 329
No external refs found!