AGT25491 (N559_3855)

Aliases : N559_3855

Description : fimbrial usher protein [Ensembl]. PapC N-terminal domain, PapC C-terminal domain [InterProScan].

Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT25491
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AAC73634	sfmD, b0532	putative outer membrane export usher protein [Ensembl]....	0.05	OrthoFinder
AAC74026	elfC, b0940	putative outer membrane fimbrial subunit export usher...	0.05	OrthoFinder
AAC75170	yehB, b2109	putative outer membrane protein [Ensembl]. PapC...	0.03	OrthoFinder
AAC77273	fimD, b4317	fimbrial usher outer membrane porin protein; FimCD...	0.04	OrthoFinder
AAL18987	STM0023, bcfC	fimbrial usher [Ensembl]. PapC N-terminal domain, PapC...	0.04	OrthoFinder
AAL19258	STM0301, safC	putative fimbriae usher [Ensembl]. PapC N-terminal...	0.03	OrthoFinder
AAL19292	STM0338, stbC	putative fimbriae; usher [Ensembl]. PapC N-terminal...	0.03	OrthoFinder
AAL19500	STM0546, fimD	outer membrane usher protein [Ensembl]. PapC N-terminal...	0.03	OrthoFinder
AAL21053	STM2150, stcC	putative outer membrane protein [Ensembl]. PapC...	0.03	OrthoFinder
AGT22732	N559_0945, FimD	outer membrane usher protein FimD [Ensembl]. PapC...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009297	pilus assembly	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015288	porin activity	None	Extended
MF	GO:0015473	fimbrial usher porin activity	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022829	wide pore channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030031	cell projection assembly	None	Extended
BP	GO:0043711	pilus organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004427	inorganic diphosphatase activity	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
MF	GO:0015128	gluconate transmembrane transporter activity	IEP	Enrichment
BP	GO:0035429	gluconate transmembrane transport	IEP	Enrichment
BP	GO:0042873	aldonate transmembrane transport	IEP	Enrichment
MF	GO:0042879	aldonate transmembrane transporter activity	IEP	Enrichment
BP	GO:0045229	external encapsulating structure organization	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
BP	GO:0071554	cell wall organization or biogenesis	IEP	Enrichment
BP	GO:0071555	cell wall organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR025885	PapC_N	27	161
IPR000015	Fimb_usher	179	715
IPR025949	PapC-like_C	726	787

External Links

No external refs found!