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  5. AGT26267

AGT26267 (N559_4673)


Aliases : N559_4673

Description : sugar ABC transporter membrane protein [Ensembl].


Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26267
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AAC74587 lsrC, b1514 autoinducer 2 import system permease protein [Ensembl].... 0.11 OrthoFinder
AAC74588 lsrD, b1515 autoinducer 2 import system permease protein [Ensembl].... 0.09 OrthoFinder
AAC76773 rbsC, b3750 D-ribose ABC transporter permease [Ensembl].... 0.02 OrthoFinder
AAC77187 ytfT, b4230 putative sugar ABC transporter permease [Ensembl].... 0.06 OrthoFinder
AAC77188 yjfF, b4231 putative sugar ABC transporter permease [Ensembl].... 0.06 OrthoFinder
EDJ91405 CGSHi22421_04858 beta-methylgalactoside transporter inner membrane... 0.03 OrthoFinder
EDJ91906 CGSHi22421_09123 D-xylose ABC transporter permease protein [Ensembl].... 0.04 OrthoFinder
EDJ91907 CGSHi22421_09128 D-xylose ABC transporter permease protein [Ensembl].... 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006011 UDP-glucose metabolic process IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
BP GO:0007154 cell communication IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
BP GO:0009225 nucleotide-sugar metabolic process IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
BP GO:0009267 cellular response to starvation IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009712 catechol-containing compound metabolic process IEP Enrichment
BP GO:0009991 response to extracellular stimulus IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016759 cellulose synthase activity IEP Enrichment
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Enrichment
MF GO:0016805 dipeptidase activity IEP Enrichment
MF GO:0018576 catechol 1,2-dioxygenase activity IEP Enrichment
BP GO:0018958 phenol-containing compound metabolic process IEP Enrichment
MF GO:0019114 catechol dioxygenase activity IEP Enrichment
BP GO:0030243 cellulose metabolic process IEP Enrichment
BP GO:0030244 cellulose biosynthetic process IEP Enrichment
MF GO:0030551 cyclic nucleotide binding IEP Enrichment
BP GO:0031667 response to nutrient levels IEP Enrichment
BP GO:0031668 cellular response to extracellular stimulus IEP Enrichment
BP GO:0031669 cellular response to nutrient levels IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
MF GO:0035438 cyclic-di-GMP binding IEP Enrichment
BP GO:0042594 response to starvation IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071496 cellular response to external stimulus IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 57 321
No external refs found!