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AGT26343 (N559_4752)


Aliases : N559_4752

Description : putative fimbrial biogenesis outer membrane usher protein [Ensembl]. PapC C-terminal domain, PapC N-terminal domain [InterProScan].


Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26343
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AAC73634 sfmD, b0532 putative outer membrane export usher protein [Ensembl].... 0.06 OrthoFinder
AAC74026 elfC, b0940 putative outer membrane fimbrial subunit export usher... 0.07 OrthoFinder
AAC75170 yehB, b2109 putative outer membrane protein [Ensembl]. PapC... 0.05 OrthoFinder
AAL18987 STM0023, bcfC fimbrial usher [Ensembl]. PapC N-terminal domain, PapC... 0.05 OrthoFinder
AAL19139 STM0175, stiC putative fimbrial usher [Ensembl]. PapC N-terminal... 0.03 OrthoFinder
AAL19292 STM0338, stbC putative fimbriae; usher [Ensembl]. PapC N-terminal... 0.07 OrthoFinder
AAL22498 STM3638, lpfC long polar fimbrial outer membrane usher protein... 0.03 OrthoFinder
CRP82688 fimD Outer membrane usher protein FimD precursor [Ensembl].... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0009297 pilus assembly IEA Interproscan
MF GO:0015473 fimbrial usher porin activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR025949 PapC-like_C 692 757
IPR025885 PapC_N 2 115
IPR000015 Fimb_usher 128 681
No external refs found!