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  5. AGT26396

AGT26396 (N559_4806)


Aliases : N559_4806

Description : putative carbohydrate ABC transport system permease [Ensembl].


Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26396
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AAC74587 lsrC, b1514 autoinducer 2 import system permease protein [Ensembl].... 0.04 OrthoFinder
AAC74588 lsrD, b1515 autoinducer 2 import system permease protein [Ensembl].... 0.04 OrthoFinder
AAC75599 yphD, b2546 putative sugar ABC transporter permease [Ensembl].... 0.04 OrthoFinder
AAC76592 xylH, b3568 D-xylose ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AAC77187 ytfT, b4230 putative sugar ABC transporter permease [Ensembl].... 0.04 OrthoFinder
AAC77188 yjfF, b4231 putative sugar ABC transporter permease [Ensembl].... 0.04 OrthoFinder
AAL22916 STM4076, ydeZ putative sugar transport protein [Ensembl].... 0.03 OrthoFinder
AGT25473 N559_3837 sugar ABC transport system permease component [Ensembl]. 0.04 OrthoFinder
AGT26146 N559_4543 ribose high-affinity ABC transporter permease component... 0.06 OrthoFinder
EDJ91906 CGSHi22421_09123 D-xylose ABC transporter permease protein [Ensembl].... 0.03 OrthoFinder
EDJ91907 CGSHi22421_09128 D-xylose ABC transporter permease protein [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
MF GO:0008198 ferrous iron binding IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
CC GO:0009289 pilus IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0019700 organic phosphonate catabolic process IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
CC GO:0042597 periplasmic space IEP Enrichment
CC GO:0042995 cell projection IEP Enrichment
BP GO:0045229 external encapsulating structure organization IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0071554 cell wall organization or biogenesis IEP Enrichment
BP GO:0071555 cell wall organization IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 54 319
No external refs found!