AGT26415 (N559_4829)

Aliases : N559_4829

Description : LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT26415
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
AAC75590	hcaR, b2537	hca operon transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AAL19636	STM0692	putative LysR family transcriptional regulator...	0.07	OrthoFinder
AAL21995	STM3121	putative LysR family transcriptional regulator...	0.01	OrthoFinder
AAL22693	STM3834	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AEA93337	OG1RF_10650	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AEA94108	OG1RF_11421	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AEA94210	OG1RF_11523	LysR family transcriptional regulator [Ensembl]....	0.03	OrthoFinder
AEA94928	OG1RF_12241	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AHY40206	CJ8421_04960	putative transcriptional regulator (lysR family) protein...	0.03	OrthoFinder
CCL18208	BN171_2160004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CRO27185	oxyR_1	Morphology and auto-aggregation control protein...	0.03	OrthoFinder
CRO37348	benM_3	Ben and cat operon transcriptional regulator [Ensembl]....	0.03	OrthoFinder
CRP00540	cysL_3	CysJI operon transcriptional activator [Ensembl]. LysR...	0.02	OrthoFinder
CRP01952	cmpR_2	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.01	OrthoFinder
CRP05348	cmpR_4	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000270	peptidoglycan metabolic process	IEP	Enrichment
BP	GO:0006022	aminoglycan metabolic process	IEP	Enrichment
BP	GO:0006026	aminoglycan catabolic process	IEP	Enrichment
BP	GO:0006027	glycosaminoglycan catabolic process	IEP	Enrichment
BP	GO:0006813	potassium ion transport	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
MF	GO:0008745	N-acetylmuramoyl-L-alanine amidase activity	IEP	Enrichment
MF	GO:0008811	chloramphenicol O-acetyltransferase activity	IEP	Enrichment
BP	GO:0009057	macromolecule catabolic process	IEP	Enrichment
BP	GO:0009116	nucleoside metabolic process	IEP	Enrichment
BP	GO:0009253	peptidoglycan catabolic process	IEP	Enrichment
MF	GO:0015078	proton transmembrane transporter activity	IEP	Enrichment
MF	GO:0015297	antiporter activity	IEP	Enrichment
MF	GO:0015298	solute:cation antiporter activity	IEP	Enrichment
MF	GO:0015299	solute:proton antiporter activity	IEP	Enrichment
MF	GO:0016407	acetyltransferase activity	IEP	Enrichment
MF	GO:0016657	oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Enrichment
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Enrichment
MF	GO:0033739	preQ1 synthase activity	IEP	Enrichment
MF	GO:0061783	peptidoglycan muralytic activity	IEP	Enrichment
MF	GO:0070403	NAD+ binding	IEP	Enrichment
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Enrichment
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Enrichment
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Enrichment
BP	GO:1901657	glycosyl compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	89	288
IPR000847	Tscrpt_reg_HTH_LysR	3	62

External Links

No external refs found!

AGT26415 (N559_4829)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation