AGT26606 (N559_5029, OxyR)

Aliases : N559_5029, OxyR

Description : DNA-binding transcriptional regulator OxyR [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT26606
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
AAC76943	oxyR, b3961	oxidative and nitrosative stress transcriptional...	0.03	OrthoFinder
AAL22963	STM4125, oxyR	regulatory protein sensor for oxidative stress...	0.04	OrthoFinder
AEA94210	OG1RF_11523	LysR family transcriptional regulator [Ensembl]....	0.04	OrthoFinder
AEA94928	OG1RF_12241	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AKI48389	L2625_00445	transcriptional regulator, LysR family [Ensembl]. LysR,...	0.03	OrthoFinder
AKI48958	L2625_01040	transcriptional regulator, LysR family [Ensembl]....	0.02	OrthoFinder
AKP14648	cysB, WX61_00569	HTH-type transcriptional regulator CysB [Ensembl]. LysR...	0.02	OrthoFinder
CCG27094	MtaR	Methionine biosynthesis and transport regulator MtaR,...	0.06	OrthoFinder
CCL17254	BN171_1410016	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.06	OrthoFinder
CCL18208	BN171_2160004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CCL18751	BN171_2600010	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CRO37348	benM_3	Ben and cat operon transcriptional regulator [Ensembl]....	0.04	OrthoFinder
CRO80200	cynR_3	Cyn operon transcriptional activator [Ensembl]. LysR...	0.04	OrthoFinder
CRP00540	cysL_3	CysJI operon transcriptional activator [Ensembl]. LysR...	0.02	OrthoFinder
CRP01952	cmpR_2	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.02	OrthoFinder
CRP03013	gltC_5	HTH-type transcriptional regulator GltC [Ensembl]. LysR...	0.03	OrthoFinder
CRP45508	benM_8	Ben and cat operon transcriptional regulator [Ensembl]....	0.02	OrthoFinder
KNA55364	VCV51_031056	LysR substrate binding domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006298	mismatch repair	IEP	Enrichment
BP	GO:0006643	membrane lipid metabolic process	IEP	Enrichment
BP	GO:0006664	glycolipid metabolic process	IEP	Enrichment
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Enrichment
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0008759	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	IEP	Enrichment
BP	GO:0009245	lipid A biosynthetic process	IEP	Enrichment
BP	GO:0009247	glycolipid biosynthetic process	IEP	Enrichment
BP	GO:0009311	oligosaccharide metabolic process	IEP	Enrichment
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Enrichment
MF	GO:0019213	deacetylase activity	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Enrichment
BP	GO:0046493	lipid A metabolic process	IEP	Enrichment
BP	GO:1901269	lipooligosaccharide metabolic process	IEP	Enrichment
BP	GO:1901271	lipooligosaccharide biosynthetic process	IEP	Enrichment
BP	GO:1903509	liposaccharide metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	3	61
IPR005119	LysR_subst-bd	89	291

External Links

No external refs found!

AGT26606 (N559_5029, OxyR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation