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AGT26649 (N559_5072)


Aliases : N559_5072

Description : rhamnose ABC transport system permease component [Ensembl].


Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26649
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AAC74587 lsrC, b1514 autoinducer 2 import system permease protein [Ensembl].... 0.03 OrthoFinder
AAC74588 lsrD, b1515 autoinducer 2 import system permease protein [Ensembl].... 0.03 OrthoFinder
AAC75599 yphD, b2546 putative sugar ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AAC77187 ytfT, b4230 putative sugar ABC transporter permease [Ensembl].... 0.04 OrthoFinder
AAC77188 yjfF, b4231 putative sugar ABC transporter permease [Ensembl].... 0.04 OrthoFinder
AAL22916 STM4076, ydeZ putative sugar transport protein [Ensembl].... 0.04 OrthoFinder
AAT48138 araH, b4460 L-arabinose ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AGT22462 N559_0666 putative transport system permease component [Ensembl]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
BP GO:0008645 hexose transmembrane transport IEP Enrichment
MF GO:0008740 L-rhamnose isomerase activity IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Enrichment
MF GO:0015149 hexose transmembrane transporter activity IEP Enrichment
MF GO:0015153 rhamnose transmembrane transporter activity IEP Enrichment
BP GO:0015749 monosaccharide transmembrane transport IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
BP GO:0019299 rhamnose metabolic process IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
BP GO:0034219 carbohydrate transmembrane transport IEP Enrichment
MF GO:0051119 sugar transmembrane transporter activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 59 318
No external refs found!