- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : N559_5078
Description : putative helix-turn-helix regulatory protein [Ensembl]. Cupin domain, Cro/C1-type helix-turn-helix domain [InterProScan].
Gene families : OG_02_0000087 (OrthoFinder) Phylogenetic Tree(s): OG0000087_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AGT26655 | |
| Cluster | HCCA: Cluster_21 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| CCL17270 | BN171_1420013 | Transcriptional regulator, RmlC-type [Ensembl]. Cupin... | 0.06 | OrthoFinder | |
| CCL17952 | BN171_1970021 | Transcriptional regulator, HTH-type [Ensembl]. Cupin... | 0.04 | OrthoFinder | |
| CCL18375 | BN171_2250001 | Transcriptional regulator, HTH-type [Ensembl].... | 0.03 | OrthoFinder | |
| CRO38857 | No alias | anaerobic benzoate catabolism transcriptional regulator... | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Enrichment |
| MF | GO:0003712 | transcription coregulator activity | IEP | Enrichment |
| MF | GO:0003714 | transcription corepressor activity | IEP | Enrichment |
| MF | GO:0004797 | thymidine kinase activity | IEP | Enrichment |
| MF | GO:0004857 | enzyme inhibitor activity | IEP | Enrichment |
| MF | GO:0004866 | endopeptidase inhibitor activity | IEP | Enrichment |
| MF | GO:0004867 | serine-type endopeptidase inhibitor activity | IEP | Enrichment |
| MF | GO:0005283 | amino acid:sodium symporter activity | IEP | Enrichment |
| MF | GO:0005343 | organic acid:sodium symporter activity | IEP | Enrichment |
| MF | GO:0005416 | amino acid:cation symporter activity | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006865 | amino acid transport | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| MF | GO:0015175 | neutral amino acid transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015655 | alanine:sodium symporter activity | IEP | Enrichment |
| BP | GO:0015804 | neutral amino acid transport | IEP | Enrichment |
| MF | GO:0016989 | sigma factor antagonist activity | IEP | Enrichment |
| MF | GO:0019136 | deoxynucleoside kinase activity | IEP | Enrichment |
| MF | GO:0019206 | nucleoside kinase activity | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
| MF | GO:0022858 | alanine transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0030414 | peptidase inhibitor activity | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0032328 | alanine transport | IEP | Enrichment |
| MF | GO:0034618 | arginine binding | IEP | Enrichment |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Enrichment |
| BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
| BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
| MF | GO:0061134 | peptidase regulator activity | IEP | Enrichment |
| MF | GO:0061135 | endopeptidase regulator activity | IEP | Enrichment |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0065007 | biological regulation | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| MF | GO:0140110 | transcription regulator activity | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| No external refs found! |