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AGT26697 (N559_5123)


Aliases : N559_5123

Description : ribose ABC transporter permease protein [Ensembl].


Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26697
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AAC75209 mglC, b2148 methyl-galactoside transporter subunit [Ensembl].... 0.04 OrthoFinder
AAC76592 xylH, b3568 D-xylose ABC transporter permease [Ensembl].... 0.08 OrthoFinder
AAC76773 rbsC, b3750 D-ribose ABC transporter permease [Ensembl].... 0.24 OrthoFinder
AAC77047 alsC, b4086 D-allose ABC transporter permease [Ensembl].... 0.06 OrthoFinder
AAL21092 STM2188, mglC methyl-galactoside transport protein [Ensembl].... 0.05 OrthoFinder
AAL22741 STM3883, rbsC D-ribose high-affinity transport protein (1st module,... 0.07 OrthoFinder
AAL22915 STM4075, ydeY putative sugar transport protein [Ensembl].... 0.03 OrthoFinder
AAL22916 STM4076, ydeZ putative sugar transport protein [Ensembl].... 0.03 OrthoFinder
AGT22039 N559_0217 D-xylose transport permease ABC transporter membrane... 0.03 OrthoFinder
AGT23414 N559_1670 beta-methylgalactoside transporter inner membrane... 0.02 OrthoFinder
AGT24251 N559_2570 putative ribose/xylose/arabinose/galactoside ABC-type... 0.06 OrthoFinder
AGT25371 N559_3733 sugar ABC transporter permease [Ensembl]. 0.08 OrthoFinder
AGT25473 N559_3837 sugar ABC transport system permease component [Ensembl]. 0.05 OrthoFinder
AGT26146 N559_4543 ribose high-affinity ABC transporter permease component... 0.05 OrthoFinder
CCL17792 BN171_1800015 ABC-type transport system, sugar-family permease... 0.03 OrthoFinder
CCL18508 rbsC, BN171_240013 ABC-type transport system, ribose-specific permease... 0.04 OrthoFinder
CRN86499 rbsC Ribose transport system permease protein RbsC [Ensembl].... 0.25 OrthoFinder
KNA60662 VCV51_032101 branched-chain amino acid transport system/permease... 0.12 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 45 313
No external refs found!