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AAL18987 (STM0023, bcfC)


Aliases : STM0023, bcfC

Description : fimbrial usher [Ensembl]. PapC N-terminal domain, PapC C-terminal domain, Outer membrane usher protein [Interproscan].


Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL18987
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AAC73634 sfmD, b0532 putative outer membrane export usher protein [Ensembl].... 0.08 OrthoFinder
AAC74026 elfC, b0940 putative outer membrane fimbrial subunit export usher... 0.09 OrthoFinder
AAC75170 yehB, b2109 putative outer membrane protein [Ensembl]. PapC... 0.08 OrthoFinder
AAC76178 yraJ, b3144 putative outer membrane protein [Ensembl]. PapC... 0.02 OrthoFinder
AAL19139 STM0175, stiC putative fimbrial usher [Ensembl]. PapC N-terminal... 0.04 OrthoFinder
AAL19500 STM0546, fimD outer membrane usher protein [Ensembl]. PapC N-terminal... 0.04 OrthoFinder
AAL22498 STM3638, lpfC long polar fimbrial outer membrane usher protein... 0.04 OrthoFinder
AGT25491 N559_3855 fimbrial usher protein [Ensembl]. PapC N-terminal... 0.04 OrthoFinder
AGT26343 N559_4752 putative fimbrial biogenesis outer membrane usher... 0.05 OrthoFinder
AGT26409 N559_4823 putative outer membrane usher protein [Ensembl]. PapC... 0.05 OrthoFinder
CRP82688 fimD Outer membrane usher protein FimD precursor [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0009297 pilus assembly IEA Interproscan
MF GO:0015473 fimbrial usher porin activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008645 hexose transmembrane transport IEP Enrichment
MF GO:0008740 L-rhamnose isomerase activity IEP Enrichment
MF GO:0015149 hexose transmembrane transporter activity IEP Enrichment
MF GO:0015153 rhamnose transmembrane transporter activity IEP Enrichment
MF GO:0015159 polysaccharide transmembrane transporter activity IEP Enrichment
BP GO:0015774 polysaccharide transport IEP Enrichment
BP GO:0019299 rhamnose metabolic process IEP Enrichment
MF GO:0022884 macromolecule transmembrane transporter activity IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
BP GO:0045229 external encapsulating structure organization IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0071554 cell wall organization or biogenesis IEP Enrichment
BP GO:0071555 cell wall organization IEP Enrichment
InterPro domains Description Start Stop
IPR025949 PapC-like_C 796 859
IPR025885 PapC_N 38 189
IPR000015 Fimb_usher 208 787
No external refs found!