Aliases : STM0023, bcfC
Description : fimbrial usher [Ensembl]. PapC N-terminal domain, PapC C-terminal domain, Outer membrane usher protein [Interproscan].
Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AAL18987 | |
Cluster | HCCA: Cluster_36 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC73634 | sfmD, b0532 | putative outer membrane export usher protein [Ensembl].... | 0.08 | OrthoFinder | |
AAC74026 | elfC, b0940 | putative outer membrane fimbrial subunit export usher... | 0.09 | OrthoFinder | |
AAC75170 | yehB, b2109 | putative outer membrane protein [Ensembl]. PapC... | 0.08 | OrthoFinder | |
AAC76178 | yraJ, b3144 | putative outer membrane protein [Ensembl]. PapC... | 0.02 | OrthoFinder | |
AAL19139 | STM0175, stiC | putative fimbrial usher [Ensembl]. PapC N-terminal... | 0.04 | OrthoFinder | |
AAL19500 | STM0546, fimD | outer membrane usher protein [Ensembl]. PapC N-terminal... | 0.04 | OrthoFinder | |
AAL22498 | STM3638, lpfC | long polar fimbrial outer membrane usher protein... | 0.04 | OrthoFinder | |
AGT25491 | N559_3855 | fimbrial usher protein [Ensembl]. PapC N-terminal... | 0.04 | OrthoFinder | |
AGT26343 | N559_4752 | putative fimbrial biogenesis outer membrane usher... | 0.05 | OrthoFinder | |
AGT26409 | N559_4823 | putative outer membrane usher protein [Ensembl]. PapC... | 0.05 | OrthoFinder | |
CRP82688 | fimD | Outer membrane usher protein FimD precursor [Ensembl].... | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
BP | GO:0009297 | pilus assembly | IEA | Interproscan |
MF | GO:0015473 | fimbrial usher porin activity | IEA | Interproscan |
CC | GO:0016020 | membrane | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0005975 | carbohydrate metabolic process | IEP | Enrichment |
BP | GO:0006810 | transport | IEP | Enrichment |
BP | GO:0008645 | hexose transmembrane transport | IEP | Enrichment |
MF | GO:0008740 | L-rhamnose isomerase activity | IEP | Enrichment |
MF | GO:0015149 | hexose transmembrane transporter activity | IEP | Enrichment |
MF | GO:0015153 | rhamnose transmembrane transporter activity | IEP | Enrichment |
MF | GO:0015159 | polysaccharide transmembrane transporter activity | IEP | Enrichment |
BP | GO:0015774 | polysaccharide transport | IEP | Enrichment |
BP | GO:0019299 | rhamnose metabolic process | IEP | Enrichment |
MF | GO:0022884 | macromolecule transmembrane transporter activity | IEP | Enrichment |
CC | GO:0030288 | outer membrane-bounded periplasmic space | IEP | Enrichment |
BP | GO:0045229 | external encapsulating structure organization | IEP | Enrichment |
BP | GO:0051179 | localization | IEP | Enrichment |
BP | GO:0051234 | establishment of localization | IEP | Enrichment |
BP | GO:0055085 | transmembrane transport | IEP | Enrichment |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | Enrichment |
BP | GO:0071555 | cell wall organization | IEP | Enrichment |
No external refs found! |