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  5. AAL19106

AAL19106 (STM0142, hofC)


Aliases : STM0142, hofC

Description : putative component in type IV pilin biogenesis [Ensembl]. Type II secretion system (T2SS) [Interproscan].


Gene families : OG_02_0000229 (OrthoFinder) Phylogenetic Tree(s): OG0000229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL19106
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AAC73217 hofC, b0106 assembly protein in type IV pilin biogenesis,... 0.04 OrthoFinder
AGT25934 N559_4321 type IV pilin biogenesis protein [Ensembl]. Type II... 0.04 OrthoFinder
CRN95443 epsF_1 General secretion pathway protein F [Ensembl]. Type II... 0.04 OrthoFinder
CRN98329 epsF_2 General secretion pathway protein F [Ensembl]. Type II... 0.04 OrthoFinder
CRO43809 epsF_3 General secretion pathway protein F [Ensembl]. Type II... 0.03 OrthoFinder
EDJ90500 CGSHi22421_06367 putative type IV pilin secretion protein [Ensembl]. Type... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006810 transport IEP Enrichment
MF GO:0015562 efflux transmembrane transporter activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
CC GO:0042597 periplasmic space IEP Enrichment
BP GO:0045229 external encapsulating structure organization IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0071554 cell wall organization or biogenesis IEP Enrichment
BP GO:0071555 cell wall organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
InterPro domains Description Start Stop
IPR018076 T2SS_GspF_dom 64 186
IPR018076 T2SS_GspF_dom 268 388
No external refs found!