AAL19213 (STM0256, yafC)


Aliases : STM0256, yafC

Description : putative LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL19213
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AAC76096 ttdR, b3060 transcriptional activator of ttdABT [Ensembl]. LysR... 0.07 OrthoFinder
AAL22467 STM3607, yhjC putative LysR family transcriptional regulator... 0.11 OrthoFinder
AGT24225 N559_2543 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
CRO61031 dmlR_17 D-malate degradation protein R [Ensembl]. LysR substrate... 0.04 OrthoFinder
EDJ90238 CGSHi22421_05102 lysR-family transcriptional regulator [Ensembl]. LysR... 0.02 OrthoFinder
KNA59855 VCV51_032266 LysR substrate binding domain-containing protein... 0.03 OrthoFinder
KNA59999 VCV51_032411 LysR substrate binding domain-containing protein... 0.04 OrthoFinder
KNA60706 VCV51_032145 LysR substrate binding domain-containing protein... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004062 aryl sulfotransferase activity IEP Enrichment
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Enrichment
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 7 64
IPR005119 LysR_subst-bd 89 291
No external refs found!