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AAL19292 (STM0338, stbC)


Aliases : STM0338, stbC

Description : putative fimbriae; usher [Ensembl]. PapC N-terminal domain, PapC C-terminal domain, Outer membrane usher protein [Interproscan].


Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL19292
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC73634 sfmD, b0532 putative outer membrane export usher protein [Ensembl].... 0.09 OrthoFinder
AAC74026 elfC, b0940 putative outer membrane fimbrial subunit export usher... 0.1 OrthoFinder
AAC75170 yehB, b2109 putative outer membrane protein [Ensembl]. PapC... 0.07 OrthoFinder
AAC76178 yraJ, b3144 putative outer membrane protein [Ensembl]. PapC... 0.02 OrthoFinder
AAL19500 STM0546, fimD outer membrane usher protein [Ensembl]. PapC N-terminal... 0.04 OrthoFinder
AGT25491 N559_3855 fimbrial usher protein [Ensembl]. PapC N-terminal... 0.03 OrthoFinder
AGT26343 N559_4752 putative fimbrial biogenesis outer membrane usher... 0.07 OrthoFinder
AGT26409 N559_4823 putative outer membrane usher protein [Ensembl]. PapC... 0.06 OrthoFinder
CRN81525 elfC putative outer membrane usher protein ElfC precursor... 0.01 OrthoFinder
CRP82688 fimD Outer membrane usher protein FimD precursor [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0009297 pilus assembly IEA Interproscan
MF GO:0015473 fimbrial usher porin activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004062 aryl sulfotransferase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
MF GO:0008740 L-rhamnose isomerase activity IEP Enrichment
CC GO:0009289 pilus IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
BP GO:0019299 rhamnose metabolic process IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
CC GO:0042597 periplasmic space IEP Enrichment
CC GO:0042995 cell projection IEP Enrichment
BP GO:0045229 external encapsulating structure organization IEP Enrichment
BP GO:0071554 cell wall organization or biogenesis IEP Enrichment
BP GO:0071555 cell wall organization IEP Enrichment
InterPro domains Description Start Stop
IPR000015 Fimb_usher 189 763
IPR025949 PapC-like_C 772 835
IPR025885 PapC_N 30 169
No external refs found!