AAL19887 (STM0952)

Aliases : STM0952

Description : putative transcriptional regulator, lysR family [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL19887
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AGT22104	N559_0282	putative LysR-family transcriptional regulator...	0.03	OrthoFinder
AGT24866	N559_3206	LysR substrate binding domain protein [Ensembl]. LysR...	0.03	OrthoFinder
CRO42652	dmlR_14	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRO77684	dmlR_21	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
EDJ90238	CGSHi22421_05102	lysR-family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003911	DNA ligase (NAD+) activity	IEP	Enrichment
MF	GO:0004518	nuclease activity	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0015675	nickel cation transport	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
BP	GO:0035444	nickel cation transmembrane transport	IEP	Enrichment
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	6	65
IPR005119	LysR_subst-bd	91	296

External Links

No external refs found!

AAL19887 (STM0952)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation