Aliases : STM1216, mfd
Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].
Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AAL20145 | |
Cluster | HCCA: Cluster_41 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC74198 | mfd, b1114 | transcription-repair coupling factor [Ensembl].... | 0.09 | OrthoFinder | |
AAK98810 | spr0006, mfd | Transcription-repair coupling factor [Ensembl].... | 0.03 | OrthoFinder | |
AEA92888 | trcF, OG1RF_10201 | transcription-repair coupling factor [Ensembl].... | 0.03 | OrthoFinder | |
AGT24835 | N559_3175 | transcription-repair coupling factor [Ensembl]. TRCF... | 0.09 | OrthoFinder | |
AHY40291 | CJ8421_05395 | transcription-repair coupling factor [Ensembl].... | 0.03 | OrthoFinder | |
AKP14165 | mfd, WX61_00076 | Transcription-repair-coupling factor [Ensembl].... | 0.05 | OrthoFinder | |
EDJ91013 | CGSHi22421_02786 | transcription-repair coupling factor [Ensembl].... | 0.05 | OrthoFinder | |
KNA59432 | VCV51_031278 | transcription-repair coupling factor [Ensembl].... | 0.06 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006281 | DNA repair | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Enrichment |
BP | GO:0001510 | RNA methylation | IEP | Enrichment |
MF | GO:0003690 | double-stranded DNA binding | IEP | Enrichment |
MF | GO:0004486 | methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity | IEP | Enrichment |
MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Enrichment |
MF | GO:0004866 | endopeptidase inhibitor activity | IEP | Enrichment |
CC | GO:0005615 | extracellular space | IEP | Enrichment |
BP | GO:0006364 | rRNA processing | IEP | Enrichment |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Enrichment |
MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Enrichment |
MF | GO:0008882 | [glutamate-ammonia-ligase] adenylyltransferase activity | IEP | Enrichment |
MF | GO:0008914 | leucyltransferase activity | IEP | Enrichment |
MF | GO:0009029 | tetraacyldisaccharide 4'-kinase activity | IEP | Enrichment |
MF | GO:0015399 | primary active transmembrane transporter activity | IEP | Enrichment |
BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
MF | GO:0016740 | transferase activity | IEP | Enrichment |
MF | GO:0016744 | transketolase or transaldolase activity | IEP | Enrichment |
MF | GO:0016755 | aminoacyltransferase activity | IEP | Enrichment |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Enrichment |
MF | GO:0016887 | ATPase | IEP | Enrichment |
BP | GO:0030163 | protein catabolic process | IEP | Enrichment |
MF | GO:0030414 | peptidase inhibitor activity | IEP | Enrichment |
MF | GO:0030983 | mismatched DNA binding | IEP | Enrichment |
BP | GO:0031167 | rRNA methylation | IEP | Enrichment |
MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | Enrichment |
MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Enrichment |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Enrichment |
MF | GO:0061134 | peptidase regulator activity | IEP | Enrichment |
MF | GO:0061135 | endopeptidase regulator activity | IEP | Enrichment |
BP | GO:0070475 | rRNA base methylation | IEP | Enrichment |
No external refs found! |