AAL20145 (STM1216, mfd)

Aliases : STM1216, mfd

Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].

Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AAL20145
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AAC74198 mfd, b1114 transcription-repair coupling factor [Ensembl].... 0.09 OrthoFinder
AAK98810 spr0006, mfd Transcription-repair coupling factor [Ensembl].... 0.03 OrthoFinder
AEA92888 trcF, OG1RF_10201 transcription-repair coupling factor [Ensembl].... 0.03 OrthoFinder
AGT24835 N559_3175 transcription-repair coupling factor [Ensembl]. TRCF... 0.09 OrthoFinder
AHY40291 CJ8421_05395 transcription-repair coupling factor [Ensembl].... 0.03 OrthoFinder
AKP14165 mfd, WX61_00076 Transcription-repair-coupling factor [Ensembl].... 0.05 OrthoFinder
EDJ91013 CGSHi22421_02786 transcription-repair coupling factor [Ensembl].... 0.05 OrthoFinder
KNA59432 VCV51_031278 transcription-repair coupling factor [Ensembl].... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004866 endopeptidase inhibitor activity IEP Enrichment
CC GO:0005615 extracellular space IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
MF GO:0008882 [glutamate-ammonia-ligase] adenylyltransferase activity IEP Enrichment
MF GO:0008914 leucyltransferase activity IEP Enrichment
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0030414 peptidase inhibitor activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0061134 peptidase regulator activity IEP Enrichment
MF GO:0061135 endopeptidase regulator activity IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
InterPro domains Description Start Stop
IPR041471 UvrB_inter 129 217
IPR011545 DEAD/DEAH_box_helicase_dom 602 762
IPR005118 TRCF_C 1006 1098
IPR001650 Helicase_C 803 906
IPR003711 CarD-like/TRCF_domain 477 572
No external refs found!