AAL20145 (STM1216, mfd)

Aliases : STM1216, mfd

Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].

Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL20145
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AAC74198	mfd, b1114	transcription-repair coupling factor [Ensembl]....	0.09	OrthoFinder
AAK98810	spr0006, mfd	Transcription-repair coupling factor [Ensembl]....	0.03	OrthoFinder
AEA92888	trcF, OG1RF_10201	transcription-repair coupling factor [Ensembl]....	0.03	OrthoFinder
AGT24835	N559_3175	transcription-repair coupling factor [Ensembl]. TRCF...	0.09	OrthoFinder
AHY40291	CJ8421_05395	transcription-repair coupling factor [Ensembl]....	0.03	OrthoFinder
AKP14165	mfd, WX61_00076	Transcription-repair-coupling factor [Ensembl]....	0.05	OrthoFinder
EDJ91013	CGSHi22421_02786	transcription-repair coupling factor [Ensembl]....	0.05	OrthoFinder
KNA59432	VCV51_031278	transcription-repair coupling factor [Ensembl]....	0.06	OrthoFinder

ggle="tooltip" data-placement="top" title="View neighborhood as graph">organic cyclic compound metabolic process

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0004486	methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity	IEP	Enrichment
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Enrichment
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Enrichment
CC	GO:0005615	extracellular space	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Enrichment
MF	GO:0008882	[glutamate-ammonia-ligase] adenylyltransferase activity	IEP	Enrichment
MF	GO:0008914	leucyltransferase activity	IEP	Enrichment
MF	GO:0009029	tetraacyldisaccharide 4'-kinase activity	IEP	Enrichment
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016740	transferase activity	IEP	Enrichment
MF	GO:0016744	transketolase or transaldolase activity	IEP	Enrichment
MF	GO:0016755	aminoacyltransferase activity	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0030163	protein catabolic process	IEP	Enrichment
MF	GO:0030414	peptidase inhibitor activity	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
BP	GO:0031167	rRNA methylation	IEP	Enrichment
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Enrichment
MF	GO:0043138	3'-5' DNA helicase activity	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment
MF	GO:0061134	peptidase regulator activity	IEP	Enrichment
MF	GO:0061135	endopeptidase regulator activity	IEP	Enrichment
BP	GO:0070475	rRNA base methylation	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041471	UvrB_inter	129	217
IPR011545	DEAD/DEAH_box_helicase_dom	602	762
IPR005118	TRCF_C	1006	1098
IPR001650	Helicase_C	803	906
IPR003711	CarD-like/TRCF_domain	477	572

External Links

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AAL20145 (STM1216, mfd)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation