AAL20803 (STM1887, yebK)

Aliases : STM1887, yebK

Description : putative transcriptional regulator [Ensembl]. SIS domain, Helix-turn-helix domain [Interproscan].

Gene families : OG_02_0000035 (OrthoFinder) Phylogenetic Tree(s): OG0000035_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL20803
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AAC74923	yebK, b1853	putative DNA-binding transcriptional regulator...	0.08	OrthoFinder
AEA93030	OG1RF_10343	RpiR family transcriptional regulator [Ensembl]. SIS...	0.05	OrthoFinder
AEA94552	OG1RF_11865	RpiR family phosphosugar-binding transcriptional...	0.03	OrthoFinder
AGT23624	N559_1891, HexR	transcriptional regulator HexR [Ensembl]....	0.06	OrthoFinder
AGT24217	N559_2535	putative sugar isomerase [Ensembl]. Helix-turn-helix...	0.02	OrthoFinder
AGT26212	N559_4618	putative helix-turn-helix protein [Ensembl]. SIS domain,...	0.07	OrthoFinder
AGT26243	N559_4649	hypothetical protein [Ensembl]. Helix-turn-helix domain,...	0.06	OrthoFinder
AKI50669	L2625_02883	HTH domain protein [Ensembl]. Sugar isomerase (SIS),...	0.03	OrthoFinder
AKI50732	L2625_02948	phosphosugar-binding transcriptional regulator, RpiR...	0.02	OrthoFinder
CCL18633	BN171_2480008	Transcriptional regulator, RpiR family [Ensembl]....	0.04	OrthoFinder
CCL19496	BN171_3180020	Transcriptional regulator, RpiR family [Ensembl]....	0.02	OrthoFinder
CCL19519	BN171_3190004	Transcriptional regulator, RpiR family [Ensembl]....	0.04	OrthoFinder
CRP05388	ybbH_1	putative HTH-type transcriptional regulator YbbH...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097367	carbohydrate derivative binding	IEA	Interproscan
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	IEA	Interproscan
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001514	selenocysteine incorporation	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0004620	phospholipase activity	IEP	Enrichment
MF	GO:0004743	pyruvate kinase activity	IEP	Enrichment
BP	GO:0006417	regulation of translation	IEP	Enrichment
BP	GO:0006451	translational readthrough	IEP	Enrichment
MF	GO:0008080	N-acetyltransferase activity	IEP	Enrichment
BP	GO:0009056	catabolic process	IEP	Enrichment
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Enrichment
MF	GO:0016298	lipase activity	IEP	Enrichment
MF	GO:0016407	acetyltransferase activity	IEP	Enrichment
MF	GO:0016410	N-acyltransferase activity	IEP	Enrichment
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Enrichment
MF	GO:0016662	oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor	IEP	Enrichment
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0030955	potassium ion binding	IEP	Enrichment
MF	GO:0031420	alkali metal ion binding	IEP	Enrichment
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Enrichment
MF	GO:0042279	nitrite reductase (cytochrome, ammonia-forming) activity	IEP	Enrichment
MF	GO:0043546	molybdopterin cofactor binding	IEP	Enrichment
BP	GO:0051246	regulation of protein metabolic process	IEP	Enrichment
MF	GO:0098809	nitrite reductase activity	IEP	Enrichment
BP	GO:1901575	organic substance catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000281	HTH_RpiR	1	76
IPR001347	SIS_dom	124	252

External Links

No external refs found!

AAL20803 (STM1887, yebK)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation