AAL20998 (STM2094, rfbC)


Aliases : STM2094, rfbC

Description : dTDP-4,deoxyrhamnose 3,5 epimerase [Ensembl]. dTDP-4-dehydrorhamnose 3 [Interproscan].


Gene families : OG_02_0000937 (OrthoFinder) Phylogenetic Tree(s): OG0000937_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL20998
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AAC75099 rfbC, b2038 dTDP-4-deoxyrhamnose-3,5-epimerase [Ensembl].... 0.07 OrthoFinder
AAK99125 spr0321, cps2M The type 2 capsule locus of Streptococcus pneumoniae... 0.03 OrthoFinder
AKI49030 rfbC, L2625_01113 dTDP-4-dehydrorhamnose 3,5-epimerase [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006304 DNA modification IEP Enrichment
BP GO:0006305 DNA alkylation IEP Enrichment
BP GO:0006306 DNA methylation IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008378 galactosyltransferase activity IEP Enrichment
BP GO:0008653 lipopolysaccharide metabolic process IEP Enrichment
MF GO:0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity IEP Enrichment
BP GO:0009103 lipopolysaccharide biosynthetic process IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0035250 UDP-galactosyltransferase activity IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0044728 DNA methylation or demethylation IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000888 dTDP_sugar_isom 5 176
No external refs found!