Aliases : STM2420, xapR
Description : regulator for XapA [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].
Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AAL21314 | |
Cluster | HCCA: Cluster_11 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC75458 | xapR, b2405 | transcriptional activator of xapAB [Ensembl]. LysR... | 0.04 | OrthoFinder | |
AGT23255 | N559_1502 | putative LysR-family transcriptional regulator... | 0.03 | OrthoFinder | |
AGT23273 | N559_1520, CynR | DNA-binding transcriptional regulator CynR [Ensembl].... | 0.04 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003677 | DNA binding | IEP | Enrichment |
MF | GO:0004803 | transposase activity | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
BP | GO:0006310 | DNA recombination | IEP | Enrichment |
BP | GO:0006313 | transposition, DNA-mediated | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
MF | GO:0009007 | site-specific DNA-methyltransferase (adenine-specific) activity | IEP | Enrichment |
MF | GO:0009008 | DNA-methyltransferase activity | IEP | Enrichment |
CC | GO:0030288 | outer membrane-bounded periplasmic space | IEP | Enrichment |
BP | GO:0032196 | transposition | IEP | Enrichment |
BP | GO:0032775 | DNA methylation on adenine | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
CC | GO:0042597 | periplasmic space | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
BP | GO:0045229 | external encapsulating structure organization | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | Enrichment |
BP | GO:0071555 | cell wall organization | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
No external refs found! |