AAL21318 (STM2424, yfeR)

Aliases : STM2424, yfeR

Description : putative LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL21318
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
AAC75049	cbl, b1987	ssuEADCB/tauABCD operon transcriptional activator...	0.04	OrthoFinder
AAC75050	nac, b1988	nitrogen assimilation regulon transcriptional regulator;...	0.04	OrthoFinder
AAK99632	spr0828, cpsY	Regulatory function on capsule expression in group B...	0.02	OrthoFinder
AAL21995	STM3121	putative LysR family transcriptional regulator...	0.06	OrthoFinder
AGT23181	N559_1423	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23556	N559_1822	nitrogen assimilation transcriptional regulator...	0.05	OrthoFinder
AKP14648	cysB, WX61_00569	HTH-type transcriptional regulator CysB [Ensembl]. LysR...	0.02	OrthoFinder
CRN70888	gltC_1	HTH-type transcriptional regulator GltC [Ensembl]. LysR...	0.04	OrthoFinder
CRO43121	cmpR_1	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.03	OrthoFinder
CRO80200	cynR_3	Cyn operon transcriptional activator [Ensembl]. LysR...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Enrichment
BP	GO:0008653	lipopolysaccharide metabolic process	IEP	Enrichment
BP	GO:0009103	lipopolysaccharide biosynthetic process	IEP	Enrichment
MF	GO:0010181	FMN binding	IEP	Enrichment
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Enrichment
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Enrichment
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Enrichment
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Enrichment
BP	GO:1903509	liposaccharide metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	5	64
IPR005119	LysR_subst-bd	90	293

External Links

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AAL21318 (STM2424, yfeR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation