AAL21995 (STM3121)

Aliases : STM3121

Description : putative LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL21995
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AAC75049	cbl, b1987	ssuEADCB/tauABCD operon transcriptional activator...	0.03	OrthoFinder
AAC75050	nac, b1988	nitrogen assimilation regulon transcriptional regulator;...	0.03	OrthoFinder
AAC75458	xapR, b2405	transcriptional activator of xapAB [Ensembl]. LysR...	0.04	OrthoFinder
AAC76609	yiaU, b3585	putative DNA-binding transcriptional regulator...	0.02	OrthoFinder
AAL20406	STM1487, ynfL	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AAL21105	STM2201, yeiE	putative LysR family transcriptional regulator...	0.05	OrthoFinder
AAL21318	STM2424, yfeR	putative LysR family transcriptional regulator...	0.06	OrthoFinder
AAL22693	STM3834	putative LysR family transcriptional regulator...	0.01	OrthoFinder
AGT23181	N559_1423	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT23273	N559_1520, CynR	DNA-binding transcriptional regulator CynR [Ensembl]....	0.01	OrthoFinder
AGT23403	N559_1659	putative DNA-binding transcriptional regulator...	0.01	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.01	OrthoFinder
AGT23556	N559_1822	nitrogen assimilation transcriptional regulator...	0.04	OrthoFinder
AGT24793	N559_3132	LysR family transcriptional regulator [Ensembl]. LysR...	0.01	OrthoFinder
AGT26415	N559_4829	LysR family transcriptional regulator [Ensembl]. LysR...	0.01	OrthoFinder
AGT26618	N559_5041	putative LysR-family transcriptional regulator...	0.02	OrthoFinder
AKP14648	cysB, WX61_00569	HTH-type transcriptional regulator CysB [Ensembl]. LysR...	0.01	OrthoFinder
CCL18208	BN171_2160004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.02	OrthoFinder
CCL20714	BN171_960006	LysR family transcriptional regulator [Ensembl]. LysR...	0.01	OrthoFinder
EDJ90156	CGSHi22421_05987	DNA-binding transcriptional regulator OxyR [Ensembl]....	0.02	OrthoFinder
KNA54936	VCV51_031768	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA59752	VCV51_032447	lysR family Bacterial regulatory helix-turn-helix...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	3	62
IPR005119	LysR_subst-bd	87	287

External Links

No external refs found!

AAL21995 (STM3121)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation