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AAL22498 (STM3638, lpfC)


Aliases : STM3638, lpfC

Description : long polar fimbrial outer membrane usher protein [Ensembl]. PapC N-terminal domain, PapC C-terminal domain, Outer membrane usher protein [Interproscan].


Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL22498
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AAC73634 sfmD, b0532 putative outer membrane export usher protein [Ensembl].... 0.08 OrthoFinder
AAC74026 elfC, b0940 putative outer membrane fimbrial subunit export usher... 0.08 OrthoFinder
AAC75170 yehB, b2109 putative outer membrane protein [Ensembl]. PapC... 0.08 OrthoFinder
AAL18987 STM0023, bcfC fimbrial usher [Ensembl]. PapC N-terminal domain, PapC... 0.04 OrthoFinder
AGT26343 N559_4752 putative fimbrial biogenesis outer membrane usher... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0009297 pilus assembly IEA Interproscan
MF GO:0015473 fimbrial usher porin activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Enrichment
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Enrichment
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0006814 sodium ion transport IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
MF GO:0008671 2-dehydro-3-deoxygalactonokinase activity IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
CC GO:0009289 pilus IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
BP GO:0016032 viral process IEP Enrichment
BP GO:0016052 carbohydrate catabolic process IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
BP GO:0019520 aldonic acid metabolic process IEP Enrichment
BP GO:0019583 galactonate metabolic process IEP Enrichment
BP GO:0019584 galactonate catabolic process IEP Enrichment
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
BP GO:0034192 D-galactonate metabolic process IEP Enrichment
BP GO:0034194 D-galactonate catabolic process IEP Enrichment
CC GO:0042995 cell projection IEP Enrichment
BP GO:0044275 cellular carbohydrate catabolic process IEP Enrichment
BP GO:0045229 external encapsulating structure organization IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
BP GO:0046176 aldonic acid catabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0071554 cell wall organization or biogenesis IEP Enrichment
BP GO:0071555 cell wall organization IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000015 Fimb_usher 208 751
IPR025885 PapC_N 34 188
IPR025949 PapC-like_C 760 827
No external refs found!