AAL22660 (STM3800, dsdC)

Aliases : STM3800, dsdC

Description : LysR family transcriptional activator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000139 (OrthoFinder) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL22660
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
AAC75850	gcvA, b2808	glycine cleavage system transcriptional activator;...	0.06	OrthoFinder
AGT23542	N559_1808	LysR family transcriptional regulator [Ensembl]. LysR...	0.01	OrthoFinder
AGT25159	N559_3511, LysR	transcriptional regulator LysR [Ensembl]. LysR substrate...	0.01	OrthoFinder
KNA56287	VCV51_030605	LysR substrate binding domain-containing protein...	0.02	OrthoFinder
KNA56897	VCV51_030532	LysR substrate binding domain-containing protein...	0.01	OrthoFinder
KNA60005	VCV51_032417	D-serine deaminase transcriptional activator [Ensembl]....	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	Enrichment
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
MF	GO:0060089	molecular transducer activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	18	76
IPR005119	LysR_subst-bd	99	306

External Links

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AAL22660 (STM3800, dsdC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation