AAL23089 (STM4265, soxS)

Aliases : STM4265, soxS

Description : transcriptional activator of superoxide response regulon [Ensembl]. Helix-turn-helix domain [Interproscan].

Gene families : OG_02_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL23089
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method	Actions
AAC77032	soxS, b4062	superoxide response regulon transcriptional activator;...	0.05	OrthoFinder
AGT23995	N559_2292	regulatory protein [Ensembl]. Helix-turn-helix domain,...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003954	NADH dehydrogenase activity	IEP	Enrichment
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	Enrichment
MF	GO:0004601	peroxidase activity	IEP	Enrichment
MF	GO:0005507	copper ion binding	IEP	Enrichment
BP	GO:0006979	response to oxidative stress	IEP	Enrichment
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Enrichment
MF	GO:0016151	nickel cation binding	IEP	Enrichment
MF	GO:0016209	antioxidant activity	IEP	Enrichment
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Enrichment
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Enrichment
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Enrichment
BP	GO:0019725	cellular homeostasis	IEP	Enrichment
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Enrichment
BP	GO:0042592	homeostatic process	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
BP	GO:0045454	cell redox homeostasis	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
MF	GO:0048038	quinone binding	IEP	Enrichment
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Enrichment
MF	GO:0051536	iron-sulfur cluster binding	IEP	Enrichment
MF	GO:0051540	metal cluster binding	IEP	Enrichment
MF	GO:0051920	peroxiredoxin activity	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
BP	GO:0065008	regulation of biological quality	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR018060	HTH_AraC	27	106

External Links

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AAL23089 (STM4265, soxS)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation