AAL23094 (STM4270)

Aliases : STM4270

Description : putative LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL23094
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AGT22920	N559_1151	putative LysR-family transcriptional regulator...	0.03	OrthoFinder
AGT23181	N559_1423	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23403	N559_1659	putative DNA-binding transcriptional regulator...	0.02	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT26618	N559_5041	putative LysR-family transcriptional regulator...	0.03	OrthoFinder
CRO11818	benM_2	Ben and cat operon transcriptional regulator [Ensembl]....	0.03	OrthoFinder
CRO72193	hcaR_3	Hca operon transcriptional activator [Ensembl]. LysR...	0.03	OrthoFinder
KNA54936	VCV51_031768	LysR substrate binding domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006464	cellular protein modification process	IEP	Enrichment
MF	GO:0030170	pyridoxal phosphate binding	IEP	Enrichment
BP	GO:0036211	protein modification process	IEP	Enrichment
MF	GO:0070279	vitamin B6 binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	89	287
IPR000847	Tscrpt_reg_HTH_LysR	3	62

External Links

No external refs found!

AAL23094 (STM4270)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation