AAL23211 (STM4391, rpsF)


Aliases : STM4391, rpsF

Description : 30S ribosomal subunit protein S6 [Ensembl]. Ribosomal protein S6 [Interproscan].


Gene families : OG_02_0000463 (OrthoFinder) Phylogenetic Tree(s): OG0000463_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL23211
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AAC77157 rpsF, b4200 30S ribosomal subunit protein S6 [Ensembl]. Ribosomal... 0.54 OrthoFinder
AAL00200 spr1396, rpsF 30S Ribosomal protein S6 (S6) [Ensembl]. Ribosomal... 0.14 OrthoFinder
ADK86903 rpsF, MPNE_0260 ribosomal protein S6 [Ensembl]. Ribosomal protein S6... 0.18 OrthoFinder
AEA92694 rpsF, OG1RF_10007 30S ribosomal protein S6 [Ensembl]. Ribosomal protein S6... 0.25 OrthoFinder
AGT26292 N559_4700 30S ribosomal protein S6 [Ensembl]. 0.18 OrthoFinder
AHY40276 rpsF, CJ8421_05320 30S ribosomal protein S6 [Ensembl]. Ribosomal protein S6... 0.26 OrthoFinder
AKP14207 rpsF, WX61_00118 30S ribosomal protein S6 [Ensembl]. Ribosomal protein S6... 0.07 OrthoFinder
CBI65791 rpsF, HPB8_234 small subunit ribosomal protein S6 [Ensembl]. Ribosomal... 0.12 OrthoFinder
CCG26824 No alias SSU ribosomal protein S6p [Ensembl]. Ribosomal protein... 0.2 OrthoFinder
CCP42775 rpsF, Rv0053 30S ribosomal protein S6 RpsF [Ensembl]. Ribosomal... 0.04 OrthoFinder
CPC89773 rpsF, ERS093114_01562 30S ribosomalprotein S6p [Ensembl]. Ribosomal protein S6... 0.31 OrthoFinder
CRO54025 rpsF 30S ribosomal protein S6 [Ensembl]. Ribosomal protein S6... 0.36 OrthoFinder
EDJ91444 rpsF, CGSHi22421_06732 30S ribosomal protein S6 [Ensembl]. Ribosomal protein S6... 0.18 OrthoFinder
KNA49059 VCV51_033834 ribosomal protein S6 [Ensembl]. Ribosomal protein S6... 0.33 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004127 cytidylate kinase activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000529 Ribosomal_S6 3 91
No external refs found!