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  5. CPC37205

CPC37205 (rluD, ERS093114_00227)


Aliases : rluD, ERS093114_00227

Description : Ribosomal large subunit pseudouridine synthase D [Ensembl]. S4 domain, RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPC37205
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AAC74170 rluC, b1086 23S rRNA pseudouridine(955,2504,2580) synthase... 0.09 OrthoFinder
AAK99634 spr0830, rluD 23S rRNA pseudouridine synthase (supresses ftsH(ts)... 0.04 OrthoFinder
AAL20116 STM1187, rluC 23S rRNA pseudouridylate synthase [Ensembl]. S4 domain,... 0.07 OrthoFinder
AEA94120 rluD, OG1RF_11433 ribosomal large subunit pseudouridine synthase D... 0.04 OrthoFinder
AEA94726 rluD2, OG1RF_12039 23S rRNA pseudouridylate synthase RluD [Ensembl]. RNA... 0.03 OrthoFinder
AGT24864 N559_3204 23S rRNA pseudouridylate synthase C [Ensembl]. S4 domain... 0.04 OrthoFinder
AHY39298 CJ8421_00115 RNA pseudouridylate synthase [Ensembl]. RNA... 0.03 OrthoFinder
AKI49838 rluD-2, L2625_01985 ribosomal large subunit pseudouridine synthase, RluD... 0.07 OrthoFinder
AKI50242 L2625_02409 ribosomal large subunit pseudouridine synthase, RluD... 0.03 OrthoFinder
AKP15182 rluC, WX61_01129 Ribosomal large subunit pseudouridine synthase C... 0.04 OrthoFinder
CCG26434 YhcT Similar to ribosomal large subunit pseudouridine... 0.04 OrthoFinder
CCG26588 No alias Ribosomal large subunit pseudouridine synthase D... 0.07 OrthoFinder
CCL19058 BN171_2840006 Putative pseudouridylate synthase, RluC/RluD family... 0.04 OrthoFinder
CRN66355 rluD Ribosomal large subunit pseudouridine synthase D... 0.05 OrthoFinder
CRO95170 rluA_1 Ribosomal large subunit pseudouridine synthase A... 0.04 OrthoFinder
EDJ90258 metN, CGSHi22421_06444 DL-methionine transporter ATP-binding subunit [Ensembl].... 0.03 OrthoFinder
KNA59656 VCV51_031359 RluA family pseudouridine synthase [Ensembl]. S4 domain,... 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 90 242
IPR002942 S4_RNA-bd 16 62
No external refs found!