CCL19199 (BN171_2950001)

Aliases : BN171_2950001

Description : Transcriptional regulator, sigma-54-dependent [Ensembl]. Sigma-54 interaction domain [Interproscan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CCL19199
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method
AAC75280	atoC, b2220	fused response regulator of ato operon, in two-component...	0.01	OrthoFinder
AAC75607	glrR, b2554	response regulator regulating glmY sRNA in two-component...	0.04	OrthoFinder
AAL19321	STM0367, prpR	regulator for prp operon (EBP family) [Ensembl]....	0.01	OrthoFinder
AAL21262	STM2361	putative regulatory protein [Ensembl]. PAS fold,...	0.03	OrthoFinder
AAL22383	STM3522, rtcR	sigma N (sigma 54)-dependent regulator of rtcBA...	0.02	OrthoFinder
AGT22959	N559_1193	anaerobic nitric oxide reductase transcription regulator...	0.03	OrthoFinder
AGT26495	N559_4911	fused DNA-binding response regulator [Ensembl]. Response...	0.03	OrthoFinder
AKP15503	zraR, WX61_01457	Transcriptional regulatory protein ZraR [Ensembl]....	0.03	OrthoFinder
CRO96924	No alias	(S)-limonene 6-monooxygenase [Ensembl]. PAS fold,...	0.03	OrthoFinder
CRP48388	glnG	Nitrogen regulation protein NR(I) [Ensembl]. Sigma-54...	0.03	OrthoFinder
KNA60650	VCV51_032089	sigma-54 interaction domain-containing protein...	0.03	OrthoFinder
KNA60791	VCV51_032053	sigma-54 interaction domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006310	DNA recombination	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002078	Sigma_54_int	340	505

External Links

UniProtKB	U3X204

CCL19199 (BN171_2950001)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation