Aliases : BN171_2950001
Description : Transcriptional regulator, sigma-54-dependent [Ensembl]. Sigma-54 interaction domain [Interproscan].
Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: CCL19199 | |
Cluster | HCCA: Cluster_1 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC75280 | atoC, b2220 | fused response regulator of ato operon, in two-component... | 0.01 | OrthoFinder | |
AAC75607 | glrR, b2554 | response regulator regulating glmY sRNA in two-component... | 0.04 | OrthoFinder | |
AAL19321 | STM0367, prpR | regulator for prp operon (EBP family) [Ensembl].... | 0.01 | OrthoFinder | |
AAL21262 | STM2361 | putative regulatory protein [Ensembl]. PAS fold,... | 0.03 | OrthoFinder | |
AAL22383 | STM3522, rtcR | sigma N (sigma 54)-dependent regulator of rtcBA... | 0.02 | OrthoFinder | |
AGT22959 | N559_1193 | anaerobic nitric oxide reductase transcription regulator... | 0.03 | OrthoFinder | |
AGT26495 | N559_4911 | fused DNA-binding response regulator [Ensembl]. Response... | 0.03 | OrthoFinder | |
AKP15503 | zraR, WX61_01457 | Transcriptional regulatory protein ZraR [Ensembl].... | 0.03 | OrthoFinder | |
CRO96924 | No alias | (S)-limonene 6-monooxygenase [Ensembl]. PAS fold,... | 0.03 | OrthoFinder | |
CRP48388 | glnG | Nitrogen regulation protein NR(I) [Ensembl]. Sigma-54... | 0.03 | OrthoFinder | |
KNA60650 | VCV51_032089 | sigma-54 interaction domain-containing protein... | 0.03 | OrthoFinder | |
KNA60791 | VCV51_032053 | sigma-54 interaction domain-containing protein... | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006310 | DNA recombination | IEP | Enrichment |
MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002078 | Sigma_54_int | 340 | 505 |
UniProtKB | U3X204 |