CCL19199 (BN171_2950001)

Aliases : BN171_2950001

Description : Transcriptional regulator, sigma-54-dependent [Ensembl]. Sigma-54 interaction domain [Interproscan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CCL19199
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AAC75280 atoC, b2220 fused response regulator of ato operon, in two-component... 0.01 OrthoFinder
AAC75607 glrR, b2554 response regulator regulating glmY sRNA in two-component... 0.04 OrthoFinder
AAL19321 STM0367, prpR regulator for prp operon (EBP family) [Ensembl].... 0.01 OrthoFinder
AAL21262 STM2361 putative regulatory protein [Ensembl]. PAS fold,... 0.03 OrthoFinder
AAL22383 STM3522, rtcR sigma N (sigma 54)-dependent regulator of rtcBA... 0.02 OrthoFinder
AGT22959 N559_1193 anaerobic nitric oxide reductase transcription regulator... 0.03 OrthoFinder
AGT26495 N559_4911 fused DNA-binding response regulator [Ensembl]. Response... 0.03 OrthoFinder
AKP15503 zraR, WX61_01457 Transcriptional regulatory protein ZraR [Ensembl].... 0.03 OrthoFinder
CRO96924 No alias (S)-limonene 6-monooxygenase [Ensembl]. PAS fold,... 0.03 OrthoFinder
CRP48388 glnG Nitrogen regulation protein NR(I) [Ensembl]. Sigma-54... 0.03 OrthoFinder
KNA60650 VCV51_032089 sigma-54 interaction domain-containing protein... 0.03 OrthoFinder
KNA60791 VCV51_032053 sigma-54 interaction domain-containing protein... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006310 DNA recombination IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR002078 Sigma_54_int 340 505
UniProtKB U3X204