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  5. CPC85832

CPC85832 (rplT, ERS093114_01500)


Aliases : rplT, ERS093114_01500

Description : 50S ribosomal protein L20 [Ensembl]. Ribosomal protein L20 [Interproscan].


Gene families : OG_02_0000432 (OrthoFinder) Phylogenetic Tree(s): OG0000432_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPC85832
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AAC74786 rplT, b1716 50S ribosomal subunit protein L20 [Ensembl]. Ribosomal... 0.21 OrthoFinder
AAK99667 spr0863, rplT 50S Ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.06 OrthoFinder
AAL20261 STM1336, rplT 50S ribosomal subunit protein L20 [Ensembl]. Ribosomal... 0.23 OrthoFinder
ADK87005 rplT, MPNE_0135 ribosomal protein L20 [Ensembl]. Ribosomal protein L20... 0.12 OrthoFinder
AEA93330 rplT, OG1RF_10643 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.19 OrthoFinder
AHY39505 rplT, CJ8421_01210 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.11 OrthoFinder
AKI49777 rplT, L2625_01922 ribosomal protein L20 [Ensembl]. Ribosomal protein L20... 0.2 OrthoFinder
AKP15673 rplT, WX61_01636 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.04 OrthoFinder
CCG26517 No alias LSU ribosomal protein L20p [Ensembl]. Ribosomal protein... 0.18 OrthoFinder
CCP44408 rplT, Rv1643 50S ribosomal protein L20 RplT [Ensembl]. Ribosomal... 0.27 OrthoFinder
CRO66872 rplT 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.29 OrthoFinder
EDJ91135 CGSHi22421_10352 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.02 OrthoFinder
KNA52216 VCV51_033474 ribosomal protein L20 [Ensembl]. Ribosomal protein L20... 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
MF GO:0050380 undecaprenyl-diphosphatase activity IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR005813 Ribosomal_L20 3 109
No external refs found!