CPD14646 (rplM, ERS093114_02155)

Aliases : rplM, ERS093114_02155

Description : 50S ribosomal protein L13 [Ensembl]. Ribosomal protein L13 [Interproscan].

Gene families : OG_02_0000475 (OrthoFinder) Phylogenetic Tree(s): OG0000475_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CPD14646
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AAC76263	rplM, b3231	50S ribosomal subunit protein L13 [Ensembl]. Ribosomal...	0.3	OrthoFinder
AAK99075	spr0271, rplM	50S Ribosomal protein L13 [Ensembl]. Ribosomal protein...	0.23	OrthoFinder
AAL22214	STM3345, rplM	50S ribosomal subunit protein L13 [Ensembl]. Ribosomal...	0.31	OrthoFinder
ADK87111	rplM, MPNE_0722	ribosomal protein L13 [Ensembl]. Ribosomal protein L13...	0.03	OrthoFinder
AEA95174	rplM, OG1RF_12487	50S ribosomal protein L13 [Ensembl]. Ribosomal protein...	0.05	OrthoFinder
AGT22335	N559_0533	ribosomal protein L13 [Ensembl].	0.12	OrthoFinder
AHY40659	rplM, CJ8421_07410	50S ribosomal protein L13 [Ensembl]. Ribosomal protein...	0.19	OrthoFinder
AKI50532	rplM, L2625_02742	ribosomal protein L13 [Ensembl]. Ribosomal protein L13...	0.13	OrthoFinder
AKP14942	rplM, WX61_00876	50S ribosomal protein L13 [Ensembl]. Ribosomal protein...	0.03	OrthoFinder
CBI67038	rplM, HPB8_1481	large subunit ribosomal protein L13 [Ensembl]. Ribosomal...	0.14	OrthoFinder
CCG27317	L13Ae	LSU ribosomal protein L13p (L13Ae) [Ensembl]. Ribosomal...	0.2	OrthoFinder
CCL20597	rplM, BN171_70037	50S ribosomal protein L13 [Ensembl]. Ribosomal protein...	0.13	OrthoFinder
CRP09073	rplM	50S ribosomal protein L13 [Ensembl]. Ribosomal protein...	0.23	OrthoFinder
EDJ91093	rplM, CGSHi22421_10142	50S ribosomal protein L13 [Ensembl]. Ribosomal protein...	0.09	OrthoFinder
KNA51829	VCV51_033517	ribosomal protein L13 [Ensembl]. Ribosomal protein L13...	0.21	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003883	CTP synthase activity	IEP	Enrichment
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Enrichment
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Enrichment
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
BP	GO:0006413	translational initiation	IEP	Enrichment
BP	GO:0006817	phosphate ion transport	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
MF	GO:0009378	four-way junction helicase activity	IEP	Enrichment
CC	GO:0009379	Holliday junction helicase complex	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
MF	GO:0032977	membrane insertase activity	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
CC	GO:0033202	DNA helicase complex	IEP	Enrichment
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment
MF	GO:0097747	RNA polymerase activity	IEP	Enrichment
MF	GO:0140104	molecular carrier activity	IEP	Enrichment
MF	GO:0140597	protein carrier activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	15	139

External Links

No external refs found!

CPD14646 (rplM, ERS093114_02155)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation