Aliases : opuCB, ERS093114_02235
Description : Osmotically activated L-carnitine/choline ABC transporter%2C permease protein OpuCB [Ensembl]. Binding-protein-dependent transport system inner membrane component [Interproscan].
Gene families : OG_02_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: CPD18769 | |
Cluster | HCCA: Cluster_26 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC75191 | yehY, b2130 | putative ABC transporter permease [Ensembl].... | 0.12 | OrthoFinder | |
AAL00480 | spr1677, proWX | ABC transporter membrane-spanning permease-choline... | 0.01 | OrthoFinder | |
AAL20411 | STM1492 | putative binding-protein-dependent transport system... | 0.05 | OrthoFinder | |
AAL20412 | STM1493 | putative periplasmic component [Ensembl]. Substrate... | 0.11 | OrthoFinder | |
AAL21069 | STM2165, yehZ | putative ABC superfamily transport protein (bind_prot)... | 0.01 | OrthoFinder | |
AEA93099 | OG1RF_10412 | ABC superfamily ATP binding cassette transporter,... | 0.02 | OrthoFinder | |
AGT23431 | N559_1689 | glycine betaine/choline ABC transporter membrane protein... | 0.01 | OrthoFinder | |
AKI49419 | bilEB, L2625_01519 | bile exclusion locus B [Ensembl]. ABC-type glycine... | 0.01 | OrthoFinder | |
AKI49422 | opuCD, L2625_01522 | glycine betaine/L-proline ABC transporter, permease... | 0.01 | OrthoFinder | |
AKI49423 | opuCC, L2625_01523 | glycine betaine/L-proline ABC transporter, glycine... | 0.01 | OrthoFinder | |
AKI49424 | opuCB, L2625_01524 | glycine betaine/L-proline ABC transporter, permease... | 0.02 | OrthoFinder | |
CCL17066 | opuCC, BN171_1180002 | ABC-type transport system, glycine... | 1.0 | OrthoFinder | |
CCL19669 | BN171_3370003 | ABC-type transport system, glycine... | 0.02 | OrthoFinder | |
CRO00991 | opuCB_1 | Glycine betaine/carnitine/choline transport system... | 0.04 | OrthoFinder | |
CRO01020 | osmF | Putative osmoprotectant uptake system substrate-binding... | 0.03 | OrthoFinder | |
CRO01052 | opuCB_2 | Glycine betaine/carnitine/choline transport system... | 0.04 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0016020 | membrane | IEA | Interproscan |
BP | GO:0055085 | transmembrane transport | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
CC | GO:0043190 | ATP-binding cassette (ABC) transporter complex | IEP | Enrichment |
CC | GO:0098533 | ATPase dependent transmembrane transport complex | IEP | Enrichment |
CC | GO:0098796 | membrane protein complex | IEP | Enrichment |
CC | GO:0098797 | plasma membrane protein complex | IEP | Enrichment |
CC | GO:1902495 | transmembrane transporter complex | IEP | Enrichment |
CC | GO:1904949 | ATPase complex | IEP | Enrichment |
CC | GO:1990351 | transporter complex | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000515 | MetI-like | 34 | 201 |
No external refs found! |