CPD18769 (opuCB, ERS093114_02235)


Aliases : opuCB, ERS093114_02235

Description : Osmotically activated L-carnitine/choline ABC transporter%2C permease protein OpuCB [Ensembl]. Binding-protein-dependent transport system inner membrane component [Interproscan].


Gene families : OG_02_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPD18769
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AAC75191 yehY, b2130 putative ABC transporter permease [Ensembl].... 0.12 OrthoFinder
AAL00480 spr1677, proWX ABC transporter membrane-spanning permease-choline... 0.01 OrthoFinder
AAL20411 STM1492 putative binding-protein-dependent transport system... 0.05 OrthoFinder
AAL20412 STM1493 putative periplasmic component [Ensembl]. Substrate... 0.11 OrthoFinder
AAL21069 STM2165, yehZ putative ABC superfamily transport protein (bind_prot)... 0.01 OrthoFinder
AEA93099 OG1RF_10412 ABC superfamily ATP binding cassette transporter,... 0.02 OrthoFinder
AGT23431 N559_1689 glycine betaine/choline ABC transporter membrane protein... 0.01 OrthoFinder
AKI49419 bilEB, L2625_01519 bile exclusion locus B [Ensembl]. ABC-type glycine... 0.01 OrthoFinder
AKI49422 opuCD, L2625_01522 glycine betaine/L-proline ABC transporter, permease... 0.01 OrthoFinder
AKI49423 opuCC, L2625_01523 glycine betaine/L-proline ABC transporter, glycine... 0.01 OrthoFinder
AKI49424 opuCB, L2625_01524 glycine betaine/L-proline ABC transporter, permease... 0.02 OrthoFinder
CCL17066 opuCC, BN171_1180002 ABC-type transport system, glycine... 1.0 OrthoFinder
CCL19669 BN171_3370003 ABC-type transport system, glycine... 0.02 OrthoFinder
CRO00991 opuCB_1 Glycine betaine/carnitine/choline transport system... 0.04 OrthoFinder
CRO01020 osmF Putative osmoprotectant uptake system substrate-binding... 0.03 OrthoFinder
CRO01052 opuCB_2 Glycine betaine/carnitine/choline transport system... 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 34 201
No external refs found!