CPD18810 (opuCC_2, ERS093114_02236)

Aliases : opuCC_2, ERS093114_02236

Description : Osmotically activated L-carnitine/choline ABC transporter%2C substrate-binding protein OpuCC [Ensembl]. Substrate binding domain of ABC-type glycine betaine transport system [Interproscan].

Gene families : OG_02_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CPD18810
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AAC75191 yehY, b2130 putative ABC transporter permease [Ensembl].... 0.1 OrthoFinder
AAL00480 spr1677, proWX ABC transporter membrane-spanning permease-choline... 0.01 OrthoFinder
AAL20411 STM1492 putative binding-protein-dependent transport system... 0.04 OrthoFinder
AAL20412 STM1493 putative periplasmic component [Ensembl]. Substrate... 0.09 OrthoFinder
AAL21069 STM2165, yehZ putative ABC superfamily transport protein (bind_prot)... 0.01 OrthoFinder
AEA93099 OG1RF_10412 ABC superfamily ATP binding cassette transporter,... 0.02 OrthoFinder
AGT23431 N559_1689 glycine betaine/choline ABC transporter membrane protein... 0.01 OrthoFinder
AKI49419 bilEB, L2625_01519 bile exclusion locus B [Ensembl]. ABC-type glycine... 0.01 OrthoFinder
AKI49422 opuCD, L2625_01522 glycine betaine/L-proline ABC transporter, permease... 0.01 OrthoFinder
AKI49423 opuCC, L2625_01523 glycine betaine/L-proline ABC transporter, glycine... 0.01 OrthoFinder
AKI49424 opuCB, L2625_01524 glycine betaine/L-proline ABC transporter, permease... 0.02 OrthoFinder
CCL17066 opuCC, BN171_1180002 ABC-type transport system, glycine... 0.33 OrthoFinder
CCL19669 BN171_3370003 ABC-type transport system, glycine... 0.02 OrthoFinder
CRO00991 opuCB_1 Glycine betaine/carnitine/choline transport system... 0.04 OrthoFinder
CRO01020 osmF Putative osmoprotectant uptake system substrate-binding... 0.02 OrthoFinder
CRO01052 opuCB_2 Glycine betaine/carnitine/choline transport system... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0022857 transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0016020 membrane IEP Enrichment
InterPro domains Description Start Stop
IPR007210 ABC_Gly_betaine_transp_sub-bd 34 301
No external refs found!