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  5. CCG27385

CCG27385


Description : SSU ribosomal protein S3p (S3e) [Ensembl]. KH domain, Ribosomal protein S3 [Interproscan].


Gene families : OG_02_0000568 (OrthoFinder) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27385
Cluster HCAA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC76339 rpsC, b3314 30S ribosomal subunit protein S3 [Ensembl]. KH domain,... 0.23 OrthoFinder
AAK98999 spr0195, rpsC 30S Ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.19 OrthoFinder
AAL22297 STM3434, rpsC 30S ribosomal subunit protein S3 [Ensembl]. KH domain,... 0.23 OrthoFinder
ADK86863 rpsC, MPNE_0200 ribosomal protein S3 [Ensembl]. 0.13 OrthoFinder
AEA92844 rpsC, OG1RF_10157 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.19 OrthoFinder
AGT22248 N559_0440 30S ribosomal protein S3 [Ensembl]. KH domain,... 0.16 OrthoFinder
AHY40886 rpsC, CJ8421_08570 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.2 OrthoFinder
AKI50561 rpsC, L2625_02771 ribosomal protein S3 [Ensembl]. Ribosomal protein S3, K... 0.15 OrthoFinder
AKP15129 rpsC, WX61_01075 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.08 OrthoFinder
CBI65723 rpsC, HPB8_166 small subunit ribosomal protein S3 [Ensembl]. KH domain,... 0.15 OrthoFinder
CCL20569 rpsC, BN171_70009 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.18 OrthoFinder
CRO73930 rpsC 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.19 OrthoFinder
EDJ91360 CGSHi22421_04633 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.17 OrthoFinder
KNA54978 VCV51_033161 ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 29 100
IPR001351 Ribosomal_S3_C 110 192
No external refs found!