CCG27625 (U1939)

Aliases : U1939

Description : 23S rRNA (Uracil-5-)-methyltransferase RumA ## LSU rRNA m(5)U1939 [Ensembl]. TRAM domain, tRNA (Uracil-5-)-methyltransferase [Interproscan].

Gene families : OG_02_0000274 (OrthoFinder) Phylogenetic Tree(s): OG0000274_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CCG27625
Cluster	HCAA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
AAL00520	spr1717	Conserved hypothetical protein [Ensembl]. TRAM domain,...	0.05	OrthoFinder
AEA93152	rumA, OG1RF_10465	23S rRNA (uracil-5-)-methyltransferase [Ensembl]. TRAM...	0.04	OrthoFinder
CRN72296	rlmD	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003872	6-phosphofructokinase activity	IEP	Enrichment
MF	GO:0003951	NAD+ kinase activity	IEP	Enrichment
MF	GO:0004478	methionine adenosyltransferase activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	Enrichment
MF	GO:0008443	phosphofructokinase activity	IEP	Enrichment
MF	GO:0008887	glycerate kinase activity	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
MF	GO:0016740	transferase activity	IEP	Enrichment
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
MF	GO:0019200	carbohydrate kinase activity	IEP	Enrichment
BP	GO:0031388	organic acid phosphorylation	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR010280	U5_MeTrfase_fam	273	451
IPR002792	TRAM_dom	7	57

External Links

No external refs found!

CCG27625 (U1939)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation