CCG27625 (U1939)

Aliases : U1939

Description : 23S rRNA (Uracil-5-)-methyltransferase RumA ## LSU rRNA m(5)U1939 [Ensembl]. TRAM domain, tRNA (Uracil-5-)-methyltransferase [Interproscan].

Gene families : OG_02_0000274 (OrthoFinder) Phylogenetic Tree(s): OG0000274_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CCG27625
Cluster HCAA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AAL00520 spr1717 Conserved hypothetical protein [Ensembl]. TRAM domain,... 0.05 OrthoFinder
AEA93152 rumA, OG1RF_10465 23S rRNA (uracil-5-)-methyltransferase [Ensembl]. TRAM... 0.04 OrthoFinder
CRN72296 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003951 NAD+ kinase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0008887 glycerate kinase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0031388 organic acid phosphorylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR010280 U5_MeTrfase_fam 273 451
IPR002792 TRAM_dom 7 57
No external refs found!