CCP45234 (rpmA, Rv2441c)

Aliases : rpmA, Rv2441c

Description : 50S ribosomal protein L27 RpmA [Ensembl]. Ribosomal L27 protein [Interproscan].

Gene families : OG_02_0000421 (OrthoFinder) Phylogenetic Tree(s): OG0000421_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CCP45234
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
AAC76217	rpmA, b3185	50S ribosomal subunit protein L27 [Ensembl]. Ribosomal...	0.1	OrthoFinder
AAL22172	STM3303, rpmA	50S ribosomal subunit protein L27 [Ensembl]. Ribosomal...	0.09	OrthoFinder
AEA93392	rpmA, OG1RF_10705	50S ribosomal protein L27 [Ensembl]. Ribosomal L27...	0.07	OrthoFinder
AGT22370	N559_0572	50S ribosomal protein L27 [Ensembl].	0.06	OrthoFinder
AHY39368	rpmA, CJ8421_00485	50S ribosomal protein L27 [Ensembl]. Ribosomal L27...	0.06	OrthoFinder
AKP14816	rpmA, WX61_00744	50S ribosomal protein L27 [Ensembl]. Ribosomal L27...	0.02	OrthoFinder
CBI66822	rpmA, HPB8_1265	large subunit ribosomal protein L27 [Ensembl]. Ribosomal...	0.05	OrthoFinder
CCG26585	No alias	LSU ribosomal protein L27p [Ensembl]. Ribosomal L27...	0.04	OrthoFinder
CCL17313	rpmA, BN171_1430040	50S ribosomal protein L27 [Ensembl]. Ribosomal L27...	0.02	OrthoFinder
CPC84847	rpmA, ERS093114_01475	50S ribosomal protein L25 [Ensembl]. Ribosomal L27...	0.07	OrthoFinder
CRN65841	rpmA	50S ribosomal protein L27 [Ensembl]. Ribosomal L27...	0.08	OrthoFinder
EDJ91659	rpmA, CGSHi22421_07888	50S ribosomal protein L27 [Ensembl]. Ribosomal L27...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
BP	GO:0006413	translational initiation	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
MF	GO:0016151	nickel cation binding	IEP	Enrichment
BP	GO:0019627	urea metabolic process	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0043419	urea catabolic process	IEP	Enrichment
BP	GO:0043605	cellular amide catabolic process	IEP	Enrichment
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001684	Ribosomal_L27	2	80

External Links

No external refs found!

CCP45234 (rpmA, Rv2441c)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation