CCL20518 (BN171_60009)

Aliases : BN171_60009

Description : Transcription antiterminator, PTS operon regulator [Ensembl]. PTS system fructose IIA component, Phosphoenolpyruvate-dependent sugar phosphotransferase system, PRD domain, Sigma-54 interaction domain [Interproscan].

Gene families : OG_02_0000294 (OrthoFinder) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CCL20518
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AGT25417 N559_3781 putative inner membrane protein [Ensembl]. PRD domain,... 0.02 OrthoFinder
CCL17027 BN171_1090008 Sigma-54 factor, interaction domain-containing... 0.05 OrthoFinder
CCL20315 BN171_410003 Transcription antiterminator [Ensembl]. PTS system... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR011608 PRD 503 584
IPR002178 PTS_EIIA_type-2_dom 844 975
IPR004701 PTS_EIIA_man-typ 598 710
IPR002078 Sigma_54_int 129 294
UniProtKB U3X269